Detail information of AT1G79880_circ_g.8


General Information
CircRNA Name AT1G79880_circ_g.8
ID in PlantcircBase ath_circ_011128
Alias Ath_circ_FC5594
Organism Arabidpsis thaliana
Position chr1: 30047678-30048203  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene AT1G79880
Parent gene annotation La protein 2
Parent gene strand -
Alternative splicing AT1G79880_circ_g.2 AT1G79880_circ_g.3 AT1G79880_circ_g.4 AT1G79880_circ_g.5 AT1G79880_circ_g.6 AT1G79880_circ_g.7 AT1G79880_circ_g.9 AT1G79880_circ_g.10
Support reads 3/3
Tissues whole_plant/seedlings
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G79880.3:2
AT1G79880.2:2
AT1G79880.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATATATATGTATACAGGATACGGCCATCTTTGCTCTTGGTGACTTCCCTGTTGAGAAATCCGTC
TGTGGGTAGATTACTGTCACTGAAGTAGAACTCAACcttggcatattgggagaagaaagatgag
acatcctccatcttaatgctgtactcaaaaggtgaagccgcaagggttcttctgtggacttgtt
caagcacc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 372
Transcript exons: 30047678-30047820,30047900-30048049,30048125-30048203
CTTGGCATATTGGGAGAAGAAAGATGAGACATCCTCCATCTTAATGCTGTACTCAAAAGGTGAA
GCCGCAAGGGTTCTTCTGTGGACTTGTTCAAGCACCTCTTCCGGTTTGGAGAGTTTAGTTCCTC
TACCGATCCTTTGTCCATTATTGGAAACTTTAAGAAAATCAGAGGTGCGCAAGAGATTAGCAAC
TTCCTCCACAATCCTCGGAGGGATGTCTTCTCTATTGATGTTACCGAGGCCAAGGAGGTTCCTC
ATACGAGAGAAGGAACAAACCAGAGGCAAACTAACCAGGCCATCTTTGCTCTTGGTGACTTCCC
TGTTGAGAAATCCGTCTGTGGGTAGATTACTGTCACTGAAGTAGAACTCAAC

Genomic sequence CTTGGCATATTGGGAGAAGAAAGATGAGACATCCTCCATCTTAATGCTGTACTCAAAAGGTGAA
GCCGCAAGGGTTCTTCTGTGGACTTGTTCAAGCACCTCTTCCGGTTTGGAGAGTTTAGTTCCTC
TACCGATCCTTTGTCCTGGATCAACAAGGTTAAAGTATATATCTCACACCAGAAGAATTGACAA
ACAAACCAAAGGGAGGGAAAGCACAAGTACCATTATTGGAAACTTTAAGAAAATCAGAGGTGCG
CAAGAGATTAGCAACTTCCTCCACAATCCTCGGAGGGATGTCTTCTCTATTGATGTTACCGAGG
CCAAGGAGGTTCCTCATACGAGAGAAGGAACAAACCAGAGGCAAACTAACCACTAGTTTCGGGC
ATCTAAGGAATAACTTTTCAACTATATCTGTATGCTACAACAATATATATGTATACAGGATACG
GCCATCTTTGCTCTTGGTGACTTCCCTGTTGAGAAATCCGTCTGTGGGTAGATTACTGTCACTG
AAGTAGAACTCAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.18809964
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA