Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d027430_circ_g.3 |
ID in PlantcircBase | zma_circ_006365 |
Alias | Zm01circ00014, GRMZM2G159427_C2 |
Organism | Zea mays |
Position | chr1: 5114434-5114789 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d027430 |
Parent gene annotation |
Protein FIZZY-RELATED 1 |
Parent gene strand | + |
Alternative splicing | Zm00001d027430_circ_g.1 Zm00001d027430_circ_g.2 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d027430_T001:2 Zm00001d027430_T002:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.26385152 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5114727-5114456(+) 5114617-5114678(-) |
Potential amino acid sequence |
MHTILEYDHKYTLELCGHWQPGLWTQVVL*(+) MWIPNKKSIVIASGCKLTIVIRPLESTNLAASVHTTQVCICGRIPESYASICSSSTRCKQAVEM R*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |