Detail information of BGIOSGA002581_circ_g.1


General Information
CircRNA Name BGIOSGA002581_circ_g.1
ID in PlantcircBase osi_circ_008901
Alias Chr01:105307_105540(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 101427-101660  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA002581
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA002581_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-AA
Number of exons covered BGIOSGA002581-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATGATAGAGACAAGTATGGCAGGTCTGGGAGAAGAGAGAGCGACCGATCTCGTGACCACTATT
CATCTAGCTCAAGAAGAAACAGAAGTAGAAGTATAAgatcacctatcaagtaccgccggagcag
gcggtctagatcatactctccgccggttagacacacacgagggcgtagatcacgatcaccatca
agatctta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATCACCTATCAAGTACCGCCGGAGCAGGCGGTCTAGATCATACTCTCCGCCGGTTAGACACAC
ACGAGGGCGTAGATCACGATCACCATCAAGATCTTACCACTCAAAGTATGGTAGTGATCGATCT
TATCGGGATGATAGAGACAAGTATGGCAGGTCTGGGAGAAGAGAGAGCGACCGATCTCGTGACC
ACTATTCATCTAGCTCAAGAAGAAACAGAAGTAGAAGTATAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021