Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os04g0501600_circ_g.2 |
| ID in PlantcircBase | osa_circ_024454 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr4: 25041207-25043979 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os04g0501600 |
| Parent gene annotation |
AT hook, DNA-binding, conserved site domain containing protein. (Os04t0501600-01);Similar to H0311C03.6 protein. (Os04t0501600-0 2) |
| Parent gene strand | - |
| Alternative splicing | Os04g0501600_circ_g.3 Os04g0501600_circ_g.4 Os04g0501600_circ_g.5 |
| Support reads | 1 |
| Tissues | shoot |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os04t0501600-01:6 Os04t0501600-02:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.102225174 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
25043950-25041209(-) |
| Potential amino acid sequence |
METVMKFVIDESEDVQQDMPSCLLQDLASYLLKNLKKEEKETLPASFELAEKVINKCYEKLKPV FTPLLRGTPLDEYSEVVTSLFEDALDAGVADNSDAPGKDMVADGKLSHKIVSDESAQESSKLEQ DANCPGKDGTPPNNTSTSAVSNGCALIDRVKSPSGPSSSDKKAELPSDDNQAKDTDDLISGAKE IPEPITTEPEKPSDHNLKKSHKLDTSTDSEVVDHSKAVNNNEDILVSRELSPETDDGDNKLPPE TGNRAADDKSKHVDNTPAGKGKRGRPPASKSHEKKNVGKGKVSGLESKKADAVSDSGGRATRRL AKDDDIKSSFKKTGEGESSKKKQKENLKQQEDTPPDEDTDEDLSLKDIVSPKSSAKTGKNKGQA GDSGGSKRKRAQEAEETPQPKKNKILKGNLVGSRIKVWWPDDRNNTHQENVITSMETVMKFVID ESEDVQQDMPSCLLQDLASYLLKNLKKEEKETLPASFELAEKVINKCYEKLKPVFTPLLRGTPL DEYSEVVTSLFEDALDAGVADNSDAPGKDMVADGKLSHKIVSDESAQESSKLEQDANCPGKDGT PPNNTSTSAVSNGCALIDRVKSPSGPSSSDKKAELPSDDNQAKDTDDLISGAKEIPEPITTEPE KPSDHNLKKSHKLDTSTDSEVVDHSKAVNNNEDILVSRELSPETDDGDNKLPPETGNRAADDKS KHVDNTPAGKGKRGRPPASKSHEKKNVGKGKVSGLESKKADAVSDSGGRATRRLAKDDDIKSSF KKTGEGESSKKKQKENLKQQEDTPPDEDTDEDLSLKDIVSPKSSAKTGKNKGQAGDSGGSKRKR AQEAEETPQPKKNKILKGNLVGSRIKVWWPDDRNNTHQENVITSMETVMKFVIDESEDVQQDMP SCLLQDLASYLLKNLKKEEKETLPASFELAEKVINKCYEKLKPVFTPLLRGTPLDEYSEVVTSL FEDALDAGVADNSDAPGKDMVADGKLSHKIVSDESAQESSKLEQDANCPGKDGTPPNNTSTSAV SNGCALIDRVKSPSGPSSSDKKAELPSDDNQAKDTDDLISGAKEIPEPITTEPEKPSDHNLKKS HKLDTSTDSEVVDHSKAVNNNEDILVSRELSPETDDGDNKLPPETGNRAADDKSKHVDNTPAGK GKRGRPPASKSHEKKNVGKGKVSGLESKKADAVSDSGGRATRRLAKDDDIKSSFKKTGEGESSK KKQKENLKQQEDTPPDEDTDEDLSLKDIVSPKSSAKTGKNKGQAGDSGGSKRKRAQEAEETPQP KKNKILKGNLVGSRIKVWWPDDRNNTHQENVITSMETVMKFVIDESEDVQQDMPSCLLQDLASY LLKNLKKEEKETLPASFELAEKVINKCYEKLKPVFTPLLRGTPLDEYSEVVTSLFEDALDAGVA DNSDAPGKDMVADGKLSHKIVSDESAQESSKLEQDANCPGKDGTPPNNTSTSAVSNGCALIDRV KSPSGPSSSDKKAELPSDDNQAKDTDDLISGAKEIPEPITTEPEKPSDHNLKKSHKLDTSTDSE VVDHSKAVNNNEDILVSRELSPETDDGDNKLPPETGNRAADDKSKHVDNTPAGKGKRGRPPASK SHEKKNVGKGKVSGLESKKADAVSDSGGRATRRLAKDDDIKSSFKKTGEGESSKKKQKENLKQQ EDTPPDEDTDEDLSLKDIVSPKSSAKTGKNKGQAGDSGGSKRKRAQEAEETPQPKKNKILKGNL VGSRIKVWWPDDR(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |