Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0501600_circ_g.2 |
ID in PlantcircBase | osa_circ_024454 |
Alias | NA |
Organism | Oryza sativa |
Position | chr4: 25041207-25043979 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os04g0501600 |
Parent gene annotation |
AT hook, DNA-binding, conserved site domain containing protein. (Os04t0501600-01);Similar to H0311C03.6 protein. (Os04t0501600-0 2) |
Parent gene strand | - |
Alternative splicing | Os04g0501600_circ_g.3 Os04g0501600_circ_g.4 Os04g0501600_circ_g.5 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os04t0501600-01:6 Os04t0501600-02:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.102225174 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
25043950-25041209(-) |
Potential amino acid sequence |
METVMKFVIDESEDVQQDMPSCLLQDLASYLLKNLKKEEKETLPASFELAEKVINKCYEKLKPV FTPLLRGTPLDEYSEVVTSLFEDALDAGVADNSDAPGKDMVADGKLSHKIVSDESAQESSKLEQ DANCPGKDGTPPNNTSTSAVSNGCALIDRVKSPSGPSSSDKKAELPSDDNQAKDTDDLISGAKE IPEPITTEPEKPSDHNLKKSHKLDTSTDSEVVDHSKAVNNNEDILVSRELSPETDDGDNKLPPE TGNRAADDKSKHVDNTPAGKGKRGRPPASKSHEKKNVGKGKVSGLESKKADAVSDSGGRATRRL AKDDDIKSSFKKTGEGESSKKKQKENLKQQEDTPPDEDTDEDLSLKDIVSPKSSAKTGKNKGQA GDSGGSKRKRAQEAEETPQPKKNKILKGNLVGSRIKVWWPDDRNNTHQENVITSMETVMKFVID ESEDVQQDMPSCLLQDLASYLLKNLKKEEKETLPASFELAEKVINKCYEKLKPVFTPLLRGTPL DEYSEVVTSLFEDALDAGVADNSDAPGKDMVADGKLSHKIVSDESAQESSKLEQDANCPGKDGT PPNNTSTSAVSNGCALIDRVKSPSGPSSSDKKAELPSDDNQAKDTDDLISGAKEIPEPITTEPE KPSDHNLKKSHKLDTSTDSEVVDHSKAVNNNEDILVSRELSPETDDGDNKLPPETGNRAADDKS KHVDNTPAGKGKRGRPPASKSHEKKNVGKGKVSGLESKKADAVSDSGGRATRRLAKDDDIKSSF KKTGEGESSKKKQKENLKQQEDTPPDEDTDEDLSLKDIVSPKSSAKTGKNKGQAGDSGGSKRKR AQEAEETPQPKKNKILKGNLVGSRIKVWWPDDRNNTHQENVITSMETVMKFVIDESEDVQQDMP SCLLQDLASYLLKNLKKEEKETLPASFELAEKVINKCYEKLKPVFTPLLRGTPLDEYSEVVTSL FEDALDAGVADNSDAPGKDMVADGKLSHKIVSDESAQESSKLEQDANCPGKDGTPPNNTSTSAV SNGCALIDRVKSPSGPSSSDKKAELPSDDNQAKDTDDLISGAKEIPEPITTEPEKPSDHNLKKS HKLDTSTDSEVVDHSKAVNNNEDILVSRELSPETDDGDNKLPPETGNRAADDKSKHVDNTPAGK GKRGRPPASKSHEKKNVGKGKVSGLESKKADAVSDSGGRATRRLAKDDDIKSSFKKTGEGESSK KKQKENLKQQEDTPPDEDTDEDLSLKDIVSPKSSAKTGKNKGQAGDSGGSKRKRAQEAEETPQP KKNKILKGNLVGSRIKVWWPDDRNNTHQENVITSMETVMKFVIDESEDVQQDMPSCLLQDLASY LLKNLKKEEKETLPASFELAEKVINKCYEKLKPVFTPLLRGTPLDEYSEVVTSLFEDALDAGVA DNSDAPGKDMVADGKLSHKIVSDESAQESSKLEQDANCPGKDGTPPNNTSTSAVSNGCALIDRV KSPSGPSSSDKKAELPSDDNQAKDTDDLISGAKEIPEPITTEPEKPSDHNLKKSHKLDTSTDSE VVDHSKAVNNNEDILVSRELSPETDDGDNKLPPETGNRAADDKSKHVDNTPAGKGKRGRPPASK SHEKKNVGKGKVSGLESKKADAVSDSGGRATRRLAKDDDIKSSFKKTGEGESSKKKQKENLKQQ EDTPPDEDTDEDLSLKDIVSPKSSAKTGKNKGQAGDSGGSKRKRAQEAEETPQPKKNKILKGNL VGSRIKVWWPDDR(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |