Detail information of Os04g0501600_circ_g.2


General Information
CircRNA Name Os04g0501600_circ_g.2
ID in PlantcircBase osa_circ_024454
Alias NA
Organism Oryza sativa
Position chr4: 25041207-25043979  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0501600
Parent gene annotation AT hook, DNA-binding, conserved site domain containing protein.
(Os04t0501600-01);Similar to H0311C03.6 protein. (Os04t0501600-0
2)
Parent gene strand -
Alternative splicing Os04g0501600_circ_g.3 Os04g0501600_circ_g.4 Os04g0501600_circ_g.5
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0501600-01:6
Os04t0501600-02:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGGCAGGATGGCATATCTTGCTGGACATCTTCGCTCTCATCAATTACAAACTTCATCACAGTT
TCCATCGAGGTGATGACATTCTCTTGATGAGTATTGtttctgtcatcaggccaccacactttga
ttcttgagccaacaagatttcctttaagaattttgttcttcttgggctggggagtctgatgaaa
gcaaagaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTCTGTCATCAGGCCACCACACTTTGATTCTTGAGCCAACAAGATTTCCTTTAAGAATTTTGT
TCTTCTTGGGCTGGGGAGTCTGATGAAAGCAAAGAAAAAGATTTGAACAACTGAAACAGAAATC
AGCTTGCAACAAGACTATTCACTAACAGCAATAAGAATCAAGTATGCATATACCTCTTCAGCTT
CCTGTGCACGTTTCCTTTTTGAGCCCCCACTGTCACCTGCCTGGCCTTTGTTTTTACCTGTTTT
GGCCGAAGACTTGGGAGATACGATATCCTGCGTTATGATAAAACAGTCATTGTGGTCGATCATC
ATCATCGCATGCACAAACATTTCAACACAAACCCATCAGATTTACACCAAATGCAAATAAAGCT
CTATGAATTTCGCCGTAGATACAAAATAGTTGGTGGCAGGTTGCCAAGCCAATCAGGAAGTTAA
AAGGATGAAAGGCAGAGAAGTTTAAAAATATGAGAGCCATCGACCCAACATGTTATAGTTTTGG
AAAGCATAAAATGTTTTGAGGTTCCACTATTTCTAAATAACACTCCTACCAGGAAACCTTAGAA
CATGGAGTCAGACAGATATAAAACTATGAATATGTAAAACAGAAATCCAACCTTCTGCTAGTGA
TATACTTATGCACGACCTATGTGCAAAGCAAAACCTCAAATCATCTACTGTTGACAAAGAAACT
ACCTTTAAACTGAGATCCTCATCAGTGTCTTCATCGGGTGGAGTATCTTCCTGCTGTTTCAAAT
TTTCCTTCTGCTTCTTCTTCGAAGATTCCCCTTCACCAGTCTTTTTGAATGAAGACTTGATATC
ATCATCTTTAGCTAGTCGCCTTGTAGCCCTTCCACCAGAATCACTAACTGCGTCAGCTTTTTTA
GACTCTAAACCTGATACTTTGCCTTTTCCAACATTCTTCTTCTCATGCGACTTTGATGCAGGAG
GCCGGCCCCGCTTTCCCTTGCCAGCAGGTGTGTTATCAACATGTTTCGATTTGTCATCAGCAGC
TCTATTCCCAGTCTCTGGTGGCAGCTTATTATCCCCATCATCAGTCTCTGGGGATAACTCCCTA
GAGACTAAAATATCCTCGTTGTTGTTAACAGCCTTAGAATGATCAACCACTTCAGAATCAGTGG
AAGTATCAAGTTTATGGCTTTTCTTTAAATTGTGATCAGATGGCTTTTCAGGCTCTGTGGTGAT
TGGTTCTGGTATTTCTTTAGCACCGGATATCAAATCATCAGTGTCTTTTGCCTGATTGTCATCA
GAAGGCAGTTCAGCCTTCTTATCAGAAGAGGATGGTCCACTTGGAGACTTGACCCTGTCTATTA
AAGCACAACCATTGCTAACCGCCGAAGTGGAAGTATTGTTTGGAGGAGTACCGTCTTTTCCAGG
GCAATTGGCATCTTGCTCTAATTTTGATGATTCCTAAGGAATAAAATATGTTCATTGTGATATC
TATCTCACTTTCAAGAACTTCAGATTGAATGTCAGTAGCGACATACCTGAGCTGACTCATCTGA
AACAATCTTATGAGATAATTTCCCATCAGCCACCTGCATCACAAGCTTTCATAGTCAGCTTGGC
TGAAATAAACTAATTAGTATATCAGAAGAACATTGGCCGGTATGATATCATATCAGATTGAGAG
AATTTACACTACAAACTTTTACAGATCACACAGTTGATAACACCAGGTCATGGACCATTCTATT
GACTCTACCAGAAACCAAAAAATATACTAACATACAATCAAGCATATCTTTGAATAACACCAAA
AAAACAAAATTAATCCCAAGACCACTGCTTGATATTTCACAGTTGATACTTTTTCAGTCAATAT
AACTTTCAACCGCTAAGACAGCATTCCAGGGTCCAAATTCTAGTTATTACCTGATGGGCAACGT
GACATTTTAAATTTAACATACATATTACTCCAGAAAGAATGCCATAGAATTGCCTGTCAAAATA
GTTTATATACAGCATGATATTTAAATTAAAATACAGTTGATCATACAAAGAAATGCCTGTCAAA
ACATTTCTATGTCTCGTGTTCCTCTCCCAAGTCCCAGTGGTGGCTATATAGCATAAACCATATT
ATACCTCTATAGAGTGACAGATCTAACCATTTCCAGTAGCAAATAGTTGAACTCAATGTGTAAG
ACTAAAAATATGTGTTAAAGGTTGACCACCTCTAATAAAAAGAACATGAGCAGTCTTTGCCCAT
TTGAACACATCTGAAAATACATTGAGAATGCCACAAAATGCACTAACTCTATGGTGAGCAAACC
TTAATTAATATTCAAAAAGGAAATTTGTTAGTAGTTTGACTGACCATATCCTTTCCAGGGGCAT
CAGAATTGTCGGCTACTCCAGCATCTAAAGCATCTTCGAACAATGATGTAACAACTTCGCTGTA
CTCATCCAAGGGAGTGCCCCGAAGTAAAGGAGTAAACACTGGCTTTAACTTCTCATAACACTTA
TTAATTACCTTCTCTGCAAGTTCGAAAGATGCTGGAAGAGTTTCCTACAGAGCAAATTTGAAAT
TTTAGTGAAGATGATCAGATCTATTAATTTTAATATGAAAGATGTAAGTGAATTCGAATTACTT
TTTCTTCCTTTTTAAGGTTCTTCAGAAGGTAAGATGCTAGATCTTGAAGCAGGCAGGATGGCAT
ATCTTGCTGGACATCTTCGCTCTCATCAATTACAAACTTCATCACAGTTTCCATCGAGGTGATG
ACATTCTCTTGATGAGTATTG
Conservation Information
Conserved circRNAs NA
PMCS 0.102225174
Functional Information
Coding potential Y
Potential coding position 25043950-25041209(-)
Potential amino acid sequence METVMKFVIDESEDVQQDMPSCLLQDLASYLLKNLKKEEKETLPASFELAEKVINKCYEKLKPV
FTPLLRGTPLDEYSEVVTSLFEDALDAGVADNSDAPGKDMVADGKLSHKIVSDESAQESSKLEQ
DANCPGKDGTPPNNTSTSAVSNGCALIDRVKSPSGPSSSDKKAELPSDDNQAKDTDDLISGAKE
IPEPITTEPEKPSDHNLKKSHKLDTSTDSEVVDHSKAVNNNEDILVSRELSPETDDGDNKLPPE
TGNRAADDKSKHVDNTPAGKGKRGRPPASKSHEKKNVGKGKVSGLESKKADAVSDSGGRATRRL
AKDDDIKSSFKKTGEGESSKKKQKENLKQQEDTPPDEDTDEDLSLKDIVSPKSSAKTGKNKGQA
GDSGGSKRKRAQEAEETPQPKKNKILKGNLVGSRIKVWWPDDRNNTHQENVITSMETVMKFVID
ESEDVQQDMPSCLLQDLASYLLKNLKKEEKETLPASFELAEKVINKCYEKLKPVFTPLLRGTPL
DEYSEVVTSLFEDALDAGVADNSDAPGKDMVADGKLSHKIVSDESAQESSKLEQDANCPGKDGT
PPNNTSTSAVSNGCALIDRVKSPSGPSSSDKKAELPSDDNQAKDTDDLISGAKEIPEPITTEPE
KPSDHNLKKSHKLDTSTDSEVVDHSKAVNNNEDILVSRELSPETDDGDNKLPPETGNRAADDKS
KHVDNTPAGKGKRGRPPASKSHEKKNVGKGKVSGLESKKADAVSDSGGRATRRLAKDDDIKSSF
KKTGEGESSKKKQKENLKQQEDTPPDEDTDEDLSLKDIVSPKSSAKTGKNKGQAGDSGGSKRKR
AQEAEETPQPKKNKILKGNLVGSRIKVWWPDDRNNTHQENVITSMETVMKFVIDESEDVQQDMP
SCLLQDLASYLLKNLKKEEKETLPASFELAEKVINKCYEKLKPVFTPLLRGTPLDEYSEVVTSL
FEDALDAGVADNSDAPGKDMVADGKLSHKIVSDESAQESSKLEQDANCPGKDGTPPNNTSTSAV
SNGCALIDRVKSPSGPSSSDKKAELPSDDNQAKDTDDLISGAKEIPEPITTEPEKPSDHNLKKS
HKLDTSTDSEVVDHSKAVNNNEDILVSRELSPETDDGDNKLPPETGNRAADDKSKHVDNTPAGK
GKRGRPPASKSHEKKNVGKGKVSGLESKKADAVSDSGGRATRRLAKDDDIKSSFKKTGEGESSK
KKQKENLKQQEDTPPDEDTDEDLSLKDIVSPKSSAKTGKNKGQAGDSGGSKRKRAQEAEETPQP
KKNKILKGNLVGSRIKVWWPDDRNNTHQENVITSMETVMKFVIDESEDVQQDMPSCLLQDLASY
LLKNLKKEEKETLPASFELAEKVINKCYEKLKPVFTPLLRGTPLDEYSEVVTSLFEDALDAGVA
DNSDAPGKDMVADGKLSHKIVSDESAQESSKLEQDANCPGKDGTPPNNTSTSAVSNGCALIDRV
KSPSGPSSSDKKAELPSDDNQAKDTDDLISGAKEIPEPITTEPEKPSDHNLKKSHKLDTSTDSE
VVDHSKAVNNNEDILVSRELSPETDDGDNKLPPETGNRAADDKSKHVDNTPAGKGKRGRPPASK
SHEKKNVGKGKVSGLESKKADAVSDSGGRATRRLAKDDDIKSSFKKTGEGESSKKKQKENLKQQ
EDTPPDEDTDEDLSLKDIVSPKSSAKTGKNKGQAGDSGGSKRKRAQEAEETPQPKKNKILKGNL
VGSRIKVWWPDDR(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017