Detail information of BGIOSGA031403_circ_g.2


General Information
CircRNA Name BGIOSGA031403_circ_g.2
ID in PlantcircBase osi_circ_008704
Alias Chr10:24513887_24514489(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21156415-21157018  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method find_circ
Parent gene BGIOSGA031403
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-AA
Number of exons covered BGIOSGA031403-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGTACAAGAAGCTGGAGAACTGTAATAGTTAAGCTCCCATCAGTATACTGACAAAAATACCAA
CAAACTTGGGACTACTACACAAAATAACAGTACTGCcctttctaattcgaacaaggataaaagt
gttctcaagtcttcatgcaatacataaataaactacacaatttgttcaaaaagataagttttag
caatatga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTCTAATTCGAACAAGGATAAAAGTGTTCTCAAGTCTTCATGCAATACATAAATAAACTAC
ACAATTTGTTCAAAAAGATAAGTTTTAGCAATATGATATCTATCACCACACAAATGAGCAATCT
CCTCGTCTCAATATAAGAATAGACCCAGGCAGGCTTATTATGCTACATGCCAATATCAGCACAA
TAATCGAAATAAGATCAAGCAAGCTACCTCATCTGGCACCATGTCAAAAAGGCTAGACCTTCTT
TTCCTTCTGGTCATATTGGATTGGCGTATAAAATATTTCTGAGCATGACTGGCTACTTGAGTAG
GTGTTCTTGAGACCACGAAATTACGAGAGATTCCTCGCCAATCACCTTTGCCAAGCTTTTGCAA
TCCAAGCAAAAACCTCCGGTGTTCTTCTTCAGTCCAAGGAACACCTGTCAAAGTCATCTTAATC
AGAAACATGGCACACAGAATATGGCCTGCAGGCACGCAGGTAGCGAGTAATGACTGGAGTACAA
GAAGCTGGAGAACTGTAATAGTTAAGCTCCCATCAGTATACTGACAAAAATACCAACAAACTTG
GGACTACTACACAAAATAACAGTACTGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021