Detail information of BGIOSGA011536_circ_g.7


General Information
CircRNA Name BGIOSGA011536_circ_g.7
ID in PlantcircBase osi_circ_004508
Alias 3:1817446|1818943
Organism Oryza sativa ssp. indica
Position chr3: 1817446-1818943  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA011536
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA011536_circ_g.6
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA011536-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCCACAAGGCTGCTAGTGTGAACTTTAGAACATATCTCAGTTTAACTGCAAATTCCATTGTTC
TCCTGGCCTTCCAATTAAAGATTATATCAAGTGTAGctccacataatagctaaatgcaaacttt
atcaaaagaagagcaatccaaaacatggtgtacctggaaaaattgagataagatccttttgtta
acatgcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCACATAATAGCTAAATGCAAACTTTATCAAAAGAAGAGCAATCCAAAACATGGTGTACCTG
GAAAAATTGAGATAAGATCCTTTTGTTAACATGCAATGTTGTATAGTTACTCCCTCCATCCCAA
AATAAGTTCATTTTTCACCCATCCCACGCATACCAATACAAAAGCAAAAGATTAAAATACACCT
ATTTTATCTACTCCCAATGCAATTATTCTCCACTTTCACAAACTTCGATGCAATAATTACTAAA
AAATGAACTTATTTTGGGACAGATGAAAGGAGCTAAAAATAAACTTATTATGGGACGGAGAGAG
TGCTAGTTAGTGTGTATTCATGGAATATTCACATACTCAGTTATCATTGATACAATATAATGAA
CAGTAATGTCAAGTTCTTACATGAAAAGTGAAAAGGCACTTTCATGCATTCCCCTACCAACAAA
TAGACGAGGCTGCACCAATACACACAACATAAGTTCACAATGTTCAACTAGATCAGAAAATAAC
TGCAAAACCTATACTGAAATTTCCAGAGAAAATCAGTAAGTGGCACCAATATCTAGGACTTTGA
TACAAGAAAGGAATTGTATAAACACCAAACGAGTTGCTAAATCAATGAAATAATAATTTAATCA
AAATAATCCAAAAAAGTTAAATAGTAGTGCGTCCAAGAATACTAATAGAATATTTTTAAAATAA
AAATGATATTAAATGTAAAAACAGAACTGTTAGAAGGTTGTAATTTCAAAACCACTGTTTCCTC
ATATTATAATTGTTTACACACAGTATTATTTCTTTATTTCTAAATAAATAATGTTTTTATTTTG
TTAAAGAAGTTTACTAAATAAATAATATTTCATCGAGAGTTAATTACTTATATTTTTGACCCAA
AAATACATTTTGCTTCATCATATCAGGTCTCCTTCTCAGGTAGTAGCTCACAACTATATTTTCC
ACATTATCTTGGTCAGTAGTTAACTGTAGTTTACAAAGAAAAATCGAGAATATCAAGTTTATTC
CCTGCAAAAGAGATTAACAAATTTATGCCTAAATTTTCTTGATGGGTAAAAATGATATGATTTA
ATGAGTTTAAAATGCAATGTTGATAAAAAACGAAGCTATCATGCAATTCACTAAAATGTAATTA
TGTAAATTTACCTGTGACCACCACATGACGAACCTCACAAACTTGTAGTCTGAACTTTCAAGTA
TACGCCGTAGAAATGGGAGAAGAAAAAGAATAGCAGCTAGCAAACTGGGAGACAAATATATAAC
TACTGCAAGGACAAAGAGTGATGGGTGGTTTTGACCATTTCCAAACCAGCCTTTGATGGCCCTG
ATAATTCCTGTTGGATTCTCCCAGGTGTATGCATATGTAACCGGCAGTAATACTACCCACAAGG
CTGCTAGTGTGAACTTTAGAACATATCTCAGTTTAACTGCAAATTCCATTGTTCTCCTGGCCTT
CCAATTAAAGATTATATCAAGTGTAG
Conservation Information
Conserved circRNAs osa_circ_017736*
PMCS
Functional Information
Coding potential Y
Potential coding position 1818904-1818931(-)
1818782-1817459(+)
Potential amino acid sequence MEFAVKLRYVLKFTLAALWVVLLPVTYAYTWENPTGIIRAIKGWFGNGQNHPSLFVLAVVIYLS
PSLLAAILFLLPFLRRILESSDYKFVRFVMWWSQLTTDQDNVENIVVSYYLRRRPDMMKQNPRL
FVGRGMHESAFSLFMYTMFWIALLLIKFAFSYYVELHLI*(-)
MALIIPVGFSQVYAYVTGSNTTHKAASVNFRTYLSLTANSIVLLAFQLKIISSVAPHNS*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021