Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA011536_circ_g.7 |
ID in PlantcircBase | osi_circ_004508 |
Alias | 3:1817446|1818943 |
Organism | Oryza sativa ssp. indica |
Position | chr3: 1817446-1818943 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA011536 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA011536_circ_g.6 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA011536-TA:4 |
Conservation Information | |
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Conserved circRNAs | osa_circ_017736* |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1818904-1818931(-) 1818782-1817459(+) |
Potential amino acid sequence |
MEFAVKLRYVLKFTLAALWVVLLPVTYAYTWENPTGIIRAIKGWFGNGQNHPSLFVLAVVIYLS PSLLAAILFLLPFLRRILESSDYKFVRFVMWWSQLTTDQDNVENIVVSYYLRRRPDMMKQNPRL FVGRGMHESAFSLFMYTMFWIALLLIKFAFSYYVELHLI*(-) MALIIPVGFSQVYAYVTGSNTTHKAASVNFRTYLSLTANSIVLLAFQLKIISSVAPHNS*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |