Detail information of AT2G06850_circ_g.2


General Information
CircRNA Name AT2G06850_circ_g.2
ID in PlantcircBase ath_circ_012983
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2764284-2764384  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G06850
Parent gene annotation Xyloglucan endotransglucosylase/hydrolase protein 4
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G06850.2:1
AT2G06850.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACATAAAGCTTCCAGCTGGTGACACAGCCGGAGTTGTCACAGCTTTCTATgcacaggatttcaa
tcaaaggggtcatatttgtttggacattttagtatgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGCACATAAAGCTTCC
AGCTGGTGACACAGCCGGAGTTGTCACAGCTTTCTAT
Conservation Information
Conserved circRNAs NA
PMCS 0.117161717
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017