Detail information of Zm00001d024967_circ_g.1


General Information
CircRNA Name Zm00001d024967_circ_g.1
ID in PlantcircBase zma_circ_006265
Alias cold_test_circ_001194
Organism Zea mays
Position chr10: 97266478-97266547  JBrowse»
Reference genome AGPv4.38
Type   i-circRNA
Identification method find_circ
Parent gene Zm00001d024967
Parent gene annotation Glycerol-3-phosphate dehydrogenase SDP6 mitochondrial
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues seedling
Exon boundary   NA-NA
Splicing signals   GT-GA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAACTGCTGGCAAAGGCAACGGCGCTGCTCCAGAAgatgggtgttgcaggtattgcagccggta
gaggag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATGGGTGTTGCAGGTATTGCAGCCGGTAGAGGAGAAACTGCTGGCAAAGGCAACGGCGCTGCT
CCAGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.813085952
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018