Detail information of Niben101Scf02268g06007_circ_g.2


General Information
CircRNA Name Niben101Scf02268g06007_circ_g.2
ID in PlantcircBase nbe_circ_000919
Alias NA
Organism Nicotiana benthamiana
Position chrNiben101Scf02268: 544374-549048  JBrowse»
Reference genome Niben.genome.v1.0.1
Type   ei-circRNA
Identification method DCC
Parent gene Niben101Scf02268g06007
Parent gene annotation NA
Parent gene strand -
Alternative splicing Niben101Scf02268g06007_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-GC
Number of exons covered Niben101Scf02268g06007.1:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCCTATTTGGAGGCTCTGGAGCAATCCGGAACTTCTGATAGTTTTTAAGAATTTCGCAAATTT
CAGCAGGGCGTAGCCATCTATGTTGTGCTTCTAAAAatctaatcacctagatcatgcaaaatat
cgaaagcaaaaaagttaagccaaatatcatatagaagcaacacccatcaagcataataacaaat
aattttac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATCTAATCACCTAGATCATGCAAAATATCGAAAGCAAAAAAGTTAAGCCAAATATCATATAGAA
GCAACACCCATCAAGCATAATAACAAATAATTTTACAGTGCCATAACAATATTCCTATTATTAT
AGGGATGAACAAGCTAAACTCCTACCAACCTAACTTTCAATTAGCATGTAAATGTTAATTAAAG
ATGTCTAACTAATTGTTCGACATGAATAAAAGTCTGGATTGACTTTTAGCTCCAAGGTTAGAGC
AATACACCTATAATAGCATATCTGTGTGCTAAAACTAATATTATATCTTTTCACTTACTCTTCG
AGCATCCAATAGCTGCGTCTTTGGAAATGCTCATTCTCTTCTCCATGGGCATAGTAGCAGTGCA
ATACATCAATGCTTCCGGCCTGTAAGAACATTAATTTCTGATCAGCTTCTTAATACAAGAACAA
AGCCCTCATAGAATGATAATTCCATGAATGTCTAACATTCGAATTAAGTACAACATACGCCTCA
ATCCCAAACTAACATTTTCAAATCAAGGACATATAACTTTAATAAGCTTCTGCACAATCATAAG
GTTCCCATTAGTTTTACCTTGAGCCTCTCGTGAGCCTCCTTCACAGTCTTCCCATCTTTTTTCT
TTCTCCAGCTATGGCCATCTTTGCGAAAATACCGTAAAACCTTCCGATCAAAAAGAAACAGTGA
ACCACCTGGAAGGGCCATACAAGTCAATTTAAAAGGTGTAAAAATACAATAAAAACACTGTGGA
TTCCAGGAATAGCTACATATTCTTGAAAGCTCTACAAACATAAAAATGCCATATACGAGCTGGT
GAAGAAACTGCGAAAACAAGTTTAATGAAGAAATGTAAACTTCTTTATCATTATCATGCCATCA
GTTAATTAATAGGCGGTTCTCAAGCAGATTAATCCTGATAATTACAGATCATCACATCAGATTT
AGGCTTAGCAGCTTGCAAACATTTACCATCATCCAGTAAATAGACTCAAGAACTCCTAAAAGCA
AGGAAAAGAGTACGTAGAGGATANCCACCTTGCTCTTGGGGAGACTCGAACTCACAACCTCTCG
GTTGGAAGTGGGGGTTGCTTAAATACACAAGATATAAATACTTAAAATAAATTAATAAGTGTCC
CCTATCTAACCATTTAAGCTTTCAGACGAGAAAGTTCATACCATTCAACATGGCATTAGAGTAA
GCAAAAATCCTGGATCGAGTCTCACCACCGTCCATTAATAAAGACATTTGTGAAAGGACTTAAA
AATATACAAATAAATGTCTCCCTCTCTAACGTTTTGAACTTTTCAATAAGGAGTACATGCTATT
CAACAACGATATGATTATTTGGTCTTAGATGCAAAGTGTGCACAAAATACCCTTTAATAGATTA
ATCATCCATCATGCGTCAACCTTTACAATGACCCCTCAACGTTCTAAAGCATCTAATCACCTAG
ATCATGCAAAATATCGAAAGCAAAAAAGTTAAGCCAAATATCATATAGAAGCAACACCCATCAA
GCATAATAACAAATAATTTTACAGTGCCATAACAATATTCCTATTATTATAGGGATGAACAAGC
TAAACTCCTACCAACCTAACTTTCAATTAGCATGTAAATGTTAATTAAAGATGTCTAACTAATT
GTTCGACATGAATAAAAGTCTGGATTGACTTTTAGCTCCAAGGTTAGAGCAATACACCTATAAT
AGCATATCTGTGTGCTAAAACTAATATTATATCTTTTCACTTACTCTTCGAGCATCCAATAGCT
GCGTCTTTGGAAATGCTCATTCTCTTCTCCATGGGCATAGTAGCAGTGCAATACATCAATGCTT
CCGGCCTGTAAGAACATTAATTTCTGATCAGCTTCTTAATACAAGAACAAAGCCCTCATAGAAT
GATAATTCCATGAATGTCTAACATTCGAATTAAGTACAACATACGCCTCAATCCCAAACTAACA
TTTTCAAATCAAGGACATATAACTTTAATAAGCTTCTGCACAATCATAAGGTTCCCATTAGTTT
TACCTTGAGCCTCTCGTGAGCCTCCTTCACAGTCTTCCCATCTTTTTTCTTTCTCCAGCTATGG
CCATCTTTGCGAAAATACCGTAAAACCTTCCGATCAAAAAGAAACAGTGAACCACCTGGAAGGG
CCATACAAGTCAATTTAAAAGGTGTAAAAATACAATAAAAACACTGTGGATTCCAGGAATAGCT
ACATATTCTTGAAAGCTCTACAAACATAAAAATGCCATATACGAGCTGGTGAAGAAACTGCGAA
AACAAGTTTAATGAAGAAATGTAAACTTCTTTATCATTATCATGCCATCAGTTAATTAATAGGC
GGTTCTCAAGCAGATTAATCCTGATAATTACAGATCATCACATCAGATTTAGGCTTAGCAGCTT
GCAAACATTTACCATCATCCAGTAAATAGACTCAAGAACTCCTAAAAGCAAGGAAAAGAGTACG
TAGAGGATAATCTTGATTACATAAGATGATGGTACTTACACATACGTGAGACAAAATAACAGTC
TTAGAACCAACTGGCAGGCCCATGAGTTACTGATATTCGGCTAAAAGTTCATATATTTAGTGCA
TTTCCACCTCATATCTTGTGAATATTTGTTGTGGTTTAAACAATTATTGGTGTATTTTGAGCTC
ATTACGTGCTTTATATGTGTAGGAGTAATTTTGGATTAAAGCAGCATACAAAGGGAGTTTTTCG
GCACAAATAGGAGTTGAAGGCATAAGAGAAAATAAGCTTAAAAGGAGACGTCAGCCTGGCTCGC
CTCGCAGGCCTAGCCTCCAAATGTGTTGAGAGATCCTGCAATCCAGTGAAGCGAAGCCATCGTG
AGCCCCTTTGCCAGACCTGCTTAAAAGAAAGCCTGGAGGTGAACATCAAGGTTCTCGTGTTGCG
GGCACAGAAGACGTGCGTTCCAGGTTTTCCAATTTGAGTTGAGATTGGACCAAAACGTCTTCTA
CACCTATAAATGCACCCGAAACTCTATTTCTACACCACTTTTGACCGAGGGAGGGTAAGAACGG
CTGTGGAGCTTCAAGTTCATCTTTTCTTCTGCCAAAACCCGAAGTCTTATGTTTCTTGGGATGA
TTTTTCGTTTGGTTACCATGTCTATGTGGAGCTATACTTCACTCAGGGAGGAAATTCCAAATAA
CACATAGGATTGAGTAGAGCAAGTTTCTGAACCCGGCCTCAATGAATGATTTTGCAATTAGGAT
AGGGATATACCATAACAGTCTTAGTCATGATACAAGAATTACAAAGGCGTTCTTGTTAACTCTA
ATTTCATAGGAACATAGTCGCAAGCTTGACTTGAACAGACGAGTGGGACATCGGAGATTCCAGT
AAGTAATATAAACCTTGTGATAATAAACTAGATAGATTGAGAAGTTAACTCAGTTGAAGAATAT
GATAGGATTGTTAGATAATCCATAATCCTAGATTGTTTTCATCACATTGATAACATAAGAATCT
GCTATTCTTTTGTCTAGAATCCATTCTTTATTTTCTTTTTTCTTTTTTTGTTTTAGTTAGTTTG
GATTCAAGCTCTTTTGGTTTTAATTCTTGTTCGATAATTAGGATCCTTTAATCTAGTGATAGTT
GATAACGAGTCTTCGTGGGAATGATAATCTATTCACTATTTTATTACTGGTCGACCGTGTATAC
TTGCGTGTGCGCTTGGCAACAACAATTACTACACAAGGAGGTGGAAGGGCGTTGAGTTTAGGCT
TTATGCCAGAAGAACATGTCCTTTTTACCGATGGTGATCTGAAGAAAACTAATTAGATAAAACA
AGCCGTAAAGCATCCAACAATAGGTCTAAATAAGGGGGCAACACATGAGTGAAATAAAGCTATA
CACAGGAAACACTATGCATAAAAAGACTACACATTGAAATCTAGTAAATGGAGCTAAAAATGAT
GTCAACAAGTATTTTAAACATACTTTTAACAAATAGCCTCTATCTGAGAGTAGGAAGGAGGAAG
AGTGAACTAGAGGAGAAAAACGCCGAGCATGTCTCTCAGGCACACACAGAGACACGCATATGTG
ACATAACTACATTTCCTCCCAGACACATCCACATAGATATAGATAGTAGCAGACTGGATAATGC
ACCATCAAGAGAGAGCGTGTAGCAACAACAACAACAACAACTACCCAGTATAGTCCCACAAAGT
GGGGTCTGGGGAGGGTAATATGTAGACGATCCTTACCCCTACCCGGAAGGGCAGAGAGGCTGTT
TCCAATCGACCCTCGGCCCAGTGAAGAAAAGGAAAAACAAAAACAAAACAAAAACAAAAGAGCA
TTAGTAACTCCAGCAGAAATAGCATAAATAATTATCTAAACATAAGAAATATAAATAAAATAGC
ATGCAATAATATCATACAGTAACTACCATAAATAACTACCATAAGGGAGACACAATCCATAAGA
GAGCGTGTAGCAAGAGAAAAGAAAAACTCTACCCAGAAACTACACGGATCACATTTTAAGAGAA
AAAAGATATTCAGCTAATGATCTTACTTGGAGGCCTATTTGGAGGCTCTGGAGCAATCCGGAAC
TTCTGATAGTTTTTAAGAATTTCGCAAATTTCAGCAGGGCGTAGCCATCTATGTTGTGCTTCTA
AAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019