Detail information of Zm00001d011366_circ_g.2


General Information
CircRNA Name Zm00001d011366_circ_g.2
ID in PlantcircBase zma_circ_009726
Alias zma_circ_0002850
Organism Zea mays
Position chr8: 148709241-148710127  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d011366
Parent gene annotation ATP-dependent zinc metalloprotease FTSH 11 chloroplastic/mitocho
ndrial
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Zm00001d011366_T004:3
Zm00001d011366_T003:3
Zm00001d011366_T005:3
Zm00001d011366_T008:3
Zm00001d011366_T007:3
Zm00001d011366_T002:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCCAGATTGTTCATCTGGAAGGTAATCTGCTATAGTGTTAGTGAGAATAAGTGCCCGCAGGTA
CTCTGCAGCCCCCCTGCTATCCACAGCATGGCTTCGattacgccaacagcaattgtaaacaaga
tcgttgagaagatttcttgagcaaaacgtgttgatctacctgtagatttggggtcaacctaatg
atgcaaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTACGCCAACAGCAATTGTAAACAAGATCGTTGAGAAGATTTCTTGAGCAAAACGTGTTGATC
TACCTGTAGATTTGGGGTCAACCTAATGATGCAACAAAATCTATCAAAACATGGTTTAAGAATT
ATGATCACAGGATAAAATTTGGCCCCTGGCCTATTAACACGAGCATGAATAATAATCAGTAGCA
TTCCTCAAAGATCTGGTAGACTTACCATTACAACATGTAAAGGTTGCTTTTCTGATATCCCAGG
GTTCATGAAAGGTTTGTCCTCATTCCCAGATACACGTTGTTTCAACTCTTGCAACTACTGACAT
AAATGCATATTACAGACCGTGAAGTGGTTACAACATGCCAAGTTACCAACATGGTAACTAATAC
AGAGTAGAAGTTAACACAGAATGGCAGAAAGCATTGTGGAAGGAAATGCATATAGTTGGAAGTT
ATAAGCTTTGTGCTTTTGCAGGATCACAGCAATGTTTGTCTATATGAAGAGCCAAACAGGCTTT
ACTTGAAAACAAGTGCTTCAACAAATGGAATAATTGCTTGAACATCCCTACAAACATGGAAATA
CATTGAAGAATACAATGCTGGGCAAGAATCGTATGTCATTGTGTGACATGTAGATGGATTTGGA
AAATTGAATGTCAGTTAAGTTACAAAACATGGTCCAGGTCTTTTTCCTGAAGCTACATTGACAG
AATAATATAGCGCATGAAACTTCATCATATATATTTTAAAGAGTTGCTAAATAATCTTACCAGG
GCTGGCAGGCTTGCAGACCTCCCAGATTGTTCATCTGGAAGGTAATCTGCTATAGTGTTAGTGA
GAATAAGTGCCCGCAGGTACTCTGCAGCCCCCCTGCTATCCACAGCATGGCTTCG
Conservation Information
Conserved circRNAs NA
PMCS 0.115591826
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b