Detail information of Os05g0567100_circ_g.6


General Information
CircRNA Name Os05g0567100_circ_g.6
ID in PlantcircBase osa_circ_029001
Alias Os_ciR2440
Organism Oryza sativa
Position chr5: 28234762-28234930  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os05g0567100
Parent gene annotation Aspartic proteinase oryzasin 1 precursor (EC 3.4.23.-). (Os05t05
67100-01);Aspartic proteinase oryzasin 1 precursor (EC 3.4.23.-)
. (Os05t0567100-02);Similar to Phytepsin. (Os05t0567100-03)
Parent gene strand +
Alternative splicing Os05g0567100_circ_g.2 Os05g0567100_circ_g.3 Os05g0567100_circ_g.4 Os05g0567100_circ_g.5 Os05g0567100_circ_g.7 Os05g0567100_circ_g.8 Os05g0567100_circ_g.9 Os05g0567100_circ_g.10 Os05g0567100_circ_g.11 Os05g0567100_circ_g.12 Os05g0567100_circ_g.13
Support reads 4
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os05t0567100-02:1
Os05t0567100-03:1
Os05t0567100-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAATTGTGTTTGGAGGAATGGATCCTAGCCACTACAAGGGCAACCATACATATGTTCCAGTCT
CTCAGAAGGGATATTGGCAGgtataagatggtagagcaaggtcttgtcagtgagcctgttttct
ccttctggttcaaccgtcattctgatgaaggagaaggtggt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 169
Transcript exons: 28234762-28234930
GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGGTTCAACCGTCAT
TCTGATGAAGGAGAAGGTGGTGAAATTGTGTTTGGAGGAATGGATCCTAGCCACTACAAGGGCA
ACCATACATATGTTCCAGTCTCTCAGAAGGGATATTGGCAG

Genomic sequence GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGGTTCAACCGTCAT
TCTGATGAAGGAGAAGGTGGTGAAATTGTGTTTGGAGGAATGGATCCTAGCCACTACAAGGGCA
ACCATACATATGTTCCAGTCTCTCAGAAGGGATATTGGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.443319625
Functional Information
Coding potential Y
Potential coding position 28234770-28234764(+)
28234831-28234764(+)
28234896-28234874(-)
Potential amino acid sequence MVEQGLVSEPVFSFWFNRHSDEGEGGEIVFGGMDPSHYKGNHTYVPVSQKGYWQV*(+)
MKEKVVKLCLEEWILATTRATIHMFQSLRRDIGRYKMVEQGLVSEPVFSFWFNRHSDEGEGGEI
VFGGMDPSHYKGNHTYVPVSQKGYWQV*(+)
MVALVVARIHSSKHNFTTFSFIRMTVEPEGENRLTDKTLLYHLIPANIPSERLEHMYGCPCSG*
(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015