Detail information of BGIOSGA015213_circ_g.1


General Information
CircRNA Name BGIOSGA015213_circ_g.1
ID in PlantcircBase osi_circ_014285
Alias Chr04:17873534_17876222(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 16237016-16239705  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA015213
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   TG-AC
Number of exons covered BGIOSGA015213-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAAAAAAAAAACTAGATAGCAATAATTAACAGATATACCGTATTTAGCTTCTTGGCCAGTTGA
GGAACACCACAGCAATGTGTAAGACCATGATAAGCCctctggcagaaacataggaccctttgga
ccgtcagaattctgtatggctgtacggatatcttcatcagttatgctcttacaggggtccactt
cctgtgga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTGGCAGAAACATAGGACCCTTTGGACCGTCAGAATTCTGTATGGCTGTACGGATATCTTCA
TCAGTTATGCTCTTACAGGGGTCCACTTCCTGTGGATTAAGACAACTGAAATATAAACTAGCAG
ATGAAATAAGTAAAGAATGGAAACAAAAGAAATACAAGTAAGTGTGTGATGTATGCAGTTTACC
AATGTCACAGTTGAACAGAAATATAATTGTTTCTACCTAGAAACTGTGCTTTGCTGCAAGAGGG
TAATGTTTTATGGCAGAGTGCACGGTTTCTTTTTAGACAATTATGTTTAGATAGGTAATATAGA
AAGTTTTAGCACTAAAAAGGTCAAATTATGCAAAGCACAAATTTATTTTCTGGATGAGAAACTG
CCGACAACTGCAGATGGGTAATCACAAGAAAATCCCCAAAAAGTATTAAAAAAAAAAAACTTGG
CCGGTAGGGGAAAGACTGCCCCCACAGTATTTTCACTAAGAAGAGCTCAACCGGAGCCCGGCCA
ATAAAGGTCACGAAAGCTGGTCCCCCTCATACATGGGGATGCTGCCCCCTGTGATTTGGGCCTT
AACCCATGCTTTGAGGCCCAGCCCCATACACGAGGGCCCGCTACGCCACCACAGGTCGGTTCAC
ACATGCCGACCAGGGAAACCAGCGAGTGACCTATGACTTGATCTGGTTTCTTTTTTCTTTAAAC
TATTTAAACCATATGACTTGATCTGGTGTTCACTTCCAAAGTTCTTTTAGAAAAATCACTCACA
ATCATACATATATAAATTTTATTACACTAAGTCACCAACACGTCTCTGATGTCTAAATAATGTA
AAGCTGTTGCTTTTGCTTACCTCCAAGCTCTTGACAAAAATTGACTGAAAAATGTAGTGGATTC
TTGCTCCACCAGATAGTTCATCTGTTGACACTTTATTTTTCCCTTCCACCATGGAAGAAAAGGC
TGGAAACAGAGAAAACATAATCACATTAGAAGAATATAGCTTAGGGAATCATCAAAGTGGCAGA
TTGAAGAGGACGAAAAACTATGCACATGAGCAACAATCTTATGAAAGAATCGATTACTCTCAAA
TCTCAGTATTTTGTGATCTAAATGTTTGCACAACTATCCTAGAAAATTTACACAAATCAAGGAT
AATTTTCTAGCTATCGTTTTTATTGTTGAGCTGTCAAGTTATTGCTACAAGCAGGAAGCAGCAA
AGGACTATATAAGAAAAACTGCACAAGAGCCATCTGTAATTCTAGATAAACTGGTAGCAAAGCA
CAGTTGGTAAGTCAAGTCTTACAGTAAATATGGTAAATTTATTCTCTCCTTTTTTTTTGTACCT
TCACAATATTTTCTGAGTATATTCAACAGTTTGACCCCCTGACCAGCCTGCATGCATTGGGATG
AAAAAATCAACACTAGAAGTAGAAATGCTCAAAAGCCATTAAAACTTAAACTACAAAATAAAAT
AGGACACACATAAGAAAGCTGCTTCTAAGAAGCTTGGAAGCCAGGCATGTGATATTCACACAAC
AAGCAGTTCTCTTGCAAGGATGATAAACTGCAAATACACACTCCCTCTAGTCATAAAAAATTTG
ATACTTCCTCCGTTTCATATTATAAGACTTTCTAGCATTGCACATATTCATATATATGTTAATG
AATCTAGACATACGTATGTGTTTAGATTCATTAACATCTATATGAATGTGGGCAATGCTAAAAA
GTCTTATAATATAAAACGGAGGGAGTACTCATGAACAGATGCAGCCAAAATGATATTTTAGCCA
AAGATACCACCTAGAGTGTATAATTTGGATAACATAAAAATGGTAGGAGTAAAGTTATGATTAA
AAATACTTCTATAAAATCAATATTTTTAAAATACACAACAATAAAATTTAGTGATAGAAATGGC
ATTTTGTTTACTTTGAAAAGTCATAAACATCACCCTTTTGTGACTAGAGGTATAGTTTTCGTAG
TTAGTTGATGAGGGACATGTTACAACTTTACAATTATGAGCTGAGAATGTTATTACCGTTGATT
CTGCAGTATCACCATATGCAGCATGCTCTTTTGCAACTGCTACCAACTGAGAATTGATGCGAGA
TTTCAAGCCTGGAAGCATATATGTAATGTGCTTTAGTAGAATCTGCAAAAGGAGCCAAGAGCGG
CCGTAGTCAATTGCAGATATACGATGCATTAGCAAATCACATGCAGATAAAGTTACAATACAGT
ACCAAATTTTCGCATTTTCAATTAAAAGATAAAGCATTGCAATAAGTTCGGTTTATAAGAGAAT
AAATTCATCATTTACTATTTTAAAACCAATGCTCATCTGGGTGTTGAGAGTATTATTAAGCATG
CCCCTTTAGTGTAAGTGATTTTCTGACCTCCTCAATACTTCTTTGGAGGTTTTAATTTAATCAT
GAAGCATCTTACGTTGGCTCATAATCTTGCACTAAATGACTGCTAATTCATTCTGAGTCAGTTT
GTCTTAGCGAACAATTTCCAATGAAGCCCATGTTGCCAATGTTTGTTTATGATATTGACAGGAG
GAATCTAATGAGGCTGAGAAAATGAATAAAGGAAAAAAAAAACTAGATAGCAATAATTAACAGA
TATACCGTATTTAGCTTCTTGGCCAGTTGAGGAACACCACAGCAATGTGTAAGACCATGATAAG
CC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2931
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021