Detail information of AT1G73180_circ_g.5


General Information
CircRNA Name AT1G73180_circ_g.5
ID in PlantcircBase ath_circ_009925
Alias NA
Organism Arabidpsis thaliana
Position chr1: 27520198-27521251  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT1G73180
Parent gene annotation Eukaryotic translation initiation factor 2A
Parent gene strand +
Alternative splicing AT1G73180_circ_g.4 AT1G73180_circ_g.6 AT1G73180_circ_g.7
Support reads 2
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G73180.1:5
AT1G73180.2:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTACTACCGTTTTCGATTGAACATTTGGCATCACATATCATTATGTCTCTGATAGTTTTTATTA
TTTGAAATTGCAGTTACTTGGAATAAGCACAACAGGgccttctgggatgttgtaaataagaagc
agctaggaagtaataaagccgagtggtctgtgacaagtgaatggtctccagacgggcgttattt
cttgactg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCCTTCTGGGATGTTGTAAATAAGAAGCAGCTAGGAAGTAATAAAGCCGAGTGGTCTGTGACAA
GTGAATGGTCTCCAGACGGGCGTTATTTCTTGACTGCCTCAACAGCACCAAGACGTCAAATTGA
CAATGGGTATGTTAATACTTCTTCCCTCATAATTGAGTGATACAATGAGTACTATGCATCGTGC
ATCAATTGTTTGTTTTCATACCCGCCTATTTTAATCCATCACTTTTGACTTATGAACCAACCAG
TCAGAGATGGTATTATTCTTTTTTTCTCCTTGGTTTAAAGTTGTGTTCTATATCTTTCGTCTTT
GTCCTGACTGAAGGATGAAAATCTTCAACTACGACGGAAAGCGTTATTATAAGAAGATGTTTGA
GAGGCTGTATCAGGTATGTGTCTCTTAAACAGCTTTGAAAAGCATACATTGATTATTATAATTG
TCTTACTGGAGTGCTATGATTTTTACCTGCAGGCTGAATGGAAACCAGAGTCTCCAGAGAGGTT
CGGTGACATCAGTGAACTTATCAAGTCAGTTGAATCATTGAAACTCGGCGAGGGCAAATCGCAA
GGTCGGAAATTCTTGGTTCAAATGCTTGAAACTGTCTCTAATTATGAGATATTTTTGTTAACTT
ATCATGTTCTTAACCAATTTCTACTTATCTATCTTAGGACAAGGATCAGCTCAGAAGAAAACTA
TTGCCCCCAATCCTATTGCACAGAAACCGGCCGCATATCGACCTCCGCATGCTAAGCATGCAGC
TGCTGTTCAAGCCGAGGTAACTCAACAACTTTTCAATAATCACCCGTGATATCAAATTACTAAT
TATTAACCATACAGTCATGATTCTGTCTCATACTTGAAACAAAAAACGAAAATAACTCAAGTTT
CTCTCAATGAGCCCTTAAATATGCGTGTCCATAACCATATGGCCTTAAATATACACTGCTACTA
CCGTTTTCGATTGAACATTTGGCATCACATATCATTATGTCTCTGATAGTTTTTATTATTTGAA
ATTGCAGTTACTTGGAATAAGCACAACAGG
Conservation Information
Conserved circRNAs NA
PMCS 0.127122525
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017