Plant Circular RNA Database

Detail information of GLYMA_04G000100_circ_g.2

			
						 General Information
					
						CircRNA Name
						GLYMA_04G000100_circ_g.2
					
						ID in PlantcircBase
						gma_circ_008105
					
						Alias
						ciRNA862
					
						Organism
						
							Glycine max						
					
						Position
						
							chr4: 513-3907  JBrowse»						
					
						Reference genome
						
							v2.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRI, CIRCexplorer
					
						Parent gene
						
							GLYMA_04G000100						
					
						Parent gene annotation
						
							hypothetical protein
							
						Parent gene strand
						-
					
						Alternative splicing
						
							GLYMA_04G000100_circ_g.1 						
					
						Support reads
						NA
					
						Tissues
						pod
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						KRH60608:2

General Information
CircRNA Name	GLYMA_04G000100_circ_g.2
ID in PlantcircBase	gma_circ_008105
Alias	ciRNA862
Organism	Glycine max
Position	chr4: 513-3907 JBrowse»
Reference genome	v2.0.38
Type	u-circRNA
Identification method	CIRI, CIRCexplorer
Parent gene	GLYMA_04G000100
Parent gene annotation	hypothetical protein
Parent gene strand	-
Alternative splicing	GLYMA_04G000100_circ_g.1
Support reads	NA
Tissues	pod
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	KRH60608:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCCAGGTTAGTAGGGCCTGATGGTGTTGGACTGTTGGTACTGGTAAAGCTGTGCAACTCAAATG
AATAAATTCTTTATCACCTAAATGCAAAAATGGGAActtagttgaagagttggcctctccagaa
tgtatatcttcaaggcagaaattgaccatacgttcatggaatttctccttagaaagataactgt
cttccact

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTAGTTGAAGAGTTGGCCTCTCCAGAATGTATATCTTCAAGGCAGAAATTGACCATACGTTCA
TGGAATTTCTCCTTAGAAAGATAACTGTCTTCCACTGGAGGCCTCAACCCTCTGGTGGTAGCAT
ACCATAGATCCATCAATATCAAACTGGCTGTCTACAAGTTTAGACCTTGATAATGAAGATAAAT
CTCTATTCTCTTCCAATATTCCTCCCAATTCAGCAAGCTCTTTGTATTTCTTTTCTTGTGCATC
AGTCGGAGTCTTAGTTGAAATGGACTCCACTGGAACAACAGTCTTCTTCCATGGCAATTCTCGA
GGATCCTTGACATTAAGAGATAGCATAGCACATGAAGAAAAATAATCCTCATTTCTCAGTATGG
ATGAATTTCTGATCTGAGAAACAGACTCTTCTTCGATAGGCACATGTTTCTTCAATTGCCAATA
GTTCTCTGAAATATTGTAATGCCATGAAGAAAAATATGCCATTTCAGATCATTAATGTTTAAAA
AAAAGCGGAAATGTTTTGTCTAATTTAAATAACAAACCTTCCAACAGCATGCAATACTTTTTGA
AGAAGTTGAAATGTCCCTAATCCAATTAATTCTAATTTTGCAAGTTGACCCTCAAGGGAAAAGC
AATTAATTGAGATGACCCTCTTGTCCATCTGAATAAAACAAAGCATATATTGAGAGAGTTTATA
TATAGTTTACAGTTCTATTCTTCAACTTCAGCAGGGAAATTAAAACCTTGGCCAAGCAACACCA
ACCAAATTAGTGACGATTCATCTGACAAGAATATTTATCTGAAAAATAAAATTTTCTCAACCTT
AACATTTAAGCAGTTTTCTAGCAGGATTAATATTAATTGTGATTTCAGACAAAAAACATTTCAT
ACTAAGTTACATCTTTAAAGAAATAATAACAAGCTAGTGAGACAGATGGACCTATGATCATCTG
AATCTTTACACAGTCAGCTCAGATATAAATCCATATTAGATCCCACCATCCAATCATGCTCATT
GTTATAATGAAATATGGCACTGACATGAAAGCCTTTCAAATAGACAATGCAACAGTAAAGTGAG
ATTACTTGTAACATTAACCTATGGGAGAATTGGTTTCACAAATTTCTCCCTGTTTTTATGTTTA
GCAAGTATACATATTGATAGACTCATGAAGGCCATCACAGAAAAATAAACAAAAATAAGCCAAA
GTAGTTAGAGTATATGTATAATCAGTTAGGGTTGGTTTAACAGCAGTTAGTTACTGAATTAGTC
TGGTGTCTAGCTTAAATAGTAGAAAGGAAGTATAAGATCAATCGTTCTGCATTGTCACTTAGCA
TCTAGGAAAAGAACATTAGCTTCATTCGGAAGGAGAATCCACTTGTTTGTACTTCTATTATTGA
CACAAATATGATTTCTCAGTCCTTTCTATCTAAACTTTCAGACTCTGATTTTGGGTTTATAACC
CAAACTACGAAAAAACAAATACAATATGAAGGTCCATAGAAGAATCTAAAGAAGAAAGTGAACC
TCTTTCTGGCAGGAAATTTGTAGATTCTCGTATCCTTCTTCAAAGTCGGAAGAATTTATCCACA
CCCATAGGCGTCTAAATGAAGAACTGTGCTTCATTTTGCCTGATTTTTCACTTAACTCCACACC
ATGTTTGTTTGAATCATTACCAATGTCATGTTGTCCAAACTAAGTACAACGATTTCTTCCATCT
AGCTCTGTACTCATATTTTGTTGGGAACTTGGTTGCTACATGTAGGTTACAGGAGCAATTGGCT
GAGAAACTGGTGCTCCACATTGATGCAGCTGTCAAGAAAGAAAAATTAGTTTAGTTTAACCAAA
CCAACCAAGCAGTTACTGGAGTCAGCAACAGGACATCTACCATTGCTCTTCCATAGGTTACACT
GTAAAGAACAGAGTCATCATGATTTCCAGGATGTGGTGTTGTTGTCGGATATGGTTCCAGCATC
ATTCTTAATACAGACATTAATGAATCATGTATACAGGAGAGCCTTAAATAAAACAAATAAAATT
AAACCATTACTTTTTCGGACTGAGAGCCCACAATAATTATTTGATACATGCATTTCAATATGTT
TGAATCAGAACATCAGTTTAGTGTGTCTTTTAGACTCAGATGTATAACAATGAAAAAGAAGAAA
ATTCCAACAAAAAAGCTAAAATTAAAACTAAAATAAACTACCTCTGGACCCTCCAATTGGAGGG
CAGTATAATAGCTTGCATCATGTACAAGCACCTCTTGTTTGAGCCTTTTTCAAGAGCGCCCTCG
AACCTTTACCCCTGCGTAAGCACATGCACAATCCTTGTTAGTGTTTCCAAGGGAATGTTAAAAC
ATTCACAAGCTTGTTGCTTCAACTTCCCCCATAGACTCTTTCATAAGCTTTTAATTTTACCCAA
AAAGACCTACCTTCCTTGAAGACACAAAGGAAGGTGGTAACCCCAAAGCTTGGTCATAGCAAAC
CACTTTGCATGCCAAACATGAGTTCTCAGCCTCTTGGTTACATCCCCAGAAGTGCAAAAACCAT
TCTCTGGGTTTTTCTTTAGTTCATATCTCCGATGAACACACCGAGGAAGCTTCTTTTGGTGATT
CTCCTCCAAACCTGATTTGGCAAGGGCTTTATCAATTATTCCCAGTTTCTGCCTCTTTCTTCTG
CACCCTTTTCTTGCAATTTGGTTATCAAACACAGTTTTCCTTCTTCTCTTGTTCTTTTGAGACC
TATAATCACTGTTTACTCTATTTTCTATGATAGATTGAAGACTATGGAGTTCGAGAGCATGGGA
TTCAGCATATTTCTGCAAATTGATTTTCCAAGGTGGTGGTGGTGTAGGTACTGAAACTTGAGGC
TTTTTGGTTCCATCAGTAACCATGGTAAAGAACTAAGCAAAACCAAAAAAAATAAAAAAAAATT
AGTTTACAACTTTGCATTGTACAGACACAAATTATGCTGTAAAGCGTAAATAAAACCCTTCACC
TAATTGGACGATCCAATCAGAATAGAATTTACACCACCATAGTCCAAAAGGAACTACATGGGGC
ATATAGAGATATTGTAAATGAAATATACTTTAGCAAGGCTCCTATCTGATTGGTTAAATAGTAT
CATTTGTCTTTAGGAAACATAACAGGCAAACCAAAACTATCATAAAACGTTTCTCAATCCCTAA
TTCACAGATTCCCACATTTCCTAACTAACCAAAAAATGGAGATAACCAAATCACTTGTCTCCAA
CAACAATAATAAAAAGAACAAATGCACACCTTCCAGGTTAGTAGGGCCTGATGGTGTTGGACTG
TTGGTACTGGTAAAGCTGTGCAACTCAAATGAATAAATTCTTTATCACCTAAATGCAAAAATGG
GAA
						
					

			
		

Sequences
Splice junction sequence	TCCAGGTTAGTAGGGCCTGATGGTGTTGGACTGTTGGTACTGGTAAAGCTGTGCAACTCAAATG AATAAATTCTTTATCACCTAAATGCAAAAATGGGAActtagttgaagagttggcctctccagaa tgtatatcttcaaggcagaaattgaccatacgttcatggaatttctccttagaaagataactgt cttccact
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTAGTTGAAGAGTTGGCCTCTCCAGAATGTATATCTTCAAGGCAGAAATTGACCATACGTTCA TGGAATTTCTCCTTAGAAAGATAACTGTCTTCCACTGGAGGCCTCAACCCTCTGGTGGTAGCAT ACCATAGATCCATCAATATCAAACTGGCTGTCTACAAGTTTAGACCTTGATAATGAAGATAAAT CTCTATTCTCTTCCAATATTCCTCCCAATTCAGCAAGCTCTTTGTATTTCTTTTCTTGTGCATC AGTCGGAGTCTTAGTTGAAATGGACTCCACTGGAACAACAGTCTTCTTCCATGGCAATTCTCGA GGATCCTTGACATTAAGAGATAGCATAGCACATGAAGAAAAATAATCCTCATTTCTCAGTATGG ATGAATTTCTGATCTGAGAAACAGACTCTTCTTCGATAGGCACATGTTTCTTCAATTGCCAATA GTTCTCTGAAATATTGTAATGCCATGAAGAAAAATATGCCATTTCAGATCATTAATGTTTAAAA AAAAGCGGAAATGTTTTGTCTAATTTAAATAACAAACCTTCCAACAGCATGCAATACTTTTTGA AGAAGTTGAAATGTCCCTAATCCAATTAATTCTAATTTTGCAAGTTGACCCTCAAGGGAAAAGC AATTAATTGAGATGACCCTCTTGTCCATCTGAATAAAACAAAGCATATATTGAGAGAGTTTATA TATAGTTTACAGTTCTATTCTTCAACTTCAGCAGGGAAATTAAAACCTTGGCCAAGCAACACCA ACCAAATTAGTGACGATTCATCTGACAAGAATATTTATCTGAAAAATAAAATTTTCTCAACCTT AACATTTAAGCAGTTTTCTAGCAGGATTAATATTAATTGTGATTTCAGACAAAAAACATTTCAT ACTAAGTTACATCTTTAAAGAAATAATAACAAGCTAGTGAGACAGATGGACCTATGATCATCTG AATCTTTACACAGTCAGCTCAGATATAAATCCATATTAGATCCCACCATCCAATCATGCTCATT GTTATAATGAAATATGGCACTGACATGAAAGCCTTTCAAATAGACAATGCAACAGTAAAGTGAG ATTACTTGTAACATTAACCTATGGGAGAATTGGTTTCACAAATTTCTCCCTGTTTTTATGTTTA GCAAGTATACATATTGATAGACTCATGAAGGCCATCACAGAAAAATAAACAAAAATAAGCCAAA GTAGTTAGAGTATATGTATAATCAGTTAGGGTTGGTTTAACAGCAGTTAGTTACTGAATTAGTC TGGTGTCTAGCTTAAATAGTAGAAAGGAAGTATAAGATCAATCGTTCTGCATTGTCACTTAGCA TCTAGGAAAAGAACATTAGCTTCATTCGGAAGGAGAATCCACTTGTTTGTACTTCTATTATTGA CACAAATATGATTTCTCAGTCCTTTCTATCTAAACTTTCAGACTCTGATTTTGGGTTTATAACC CAAACTACGAAAAAACAAATACAATATGAAGGTCCATAGAAGAATCTAAAGAAGAAAGTGAACC TCTTTCTGGCAGGAAATTTGTAGATTCTCGTATCCTTCTTCAAAGTCGGAAGAATTTATCCACA CCCATAGGCGTCTAAATGAAGAACTGTGCTTCATTTTGCCTGATTTTTCACTTAACTCCACACC ATGTTTGTTTGAATCATTACCAATGTCATGTTGTCCAAACTAAGTACAACGATTTCTTCCATCT AGCTCTGTACTCATATTTTGTTGGGAACTTGGTTGCTACATGTAGGTTACAGGAGCAATTGGCT GAGAAACTGGTGCTCCACATTGATGCAGCTGTCAAGAAAGAAAAATTAGTTTAGTTTAACCAAA CCAACCAAGCAGTTACTGGAGTCAGCAACAGGACATCTACCATTGCTCTTCCATAGGTTACACT GTAAAGAACAGAGTCATCATGATTTCCAGGATGTGGTGTTGTTGTCGGATATGGTTCCAGCATC ATTCTTAATACAGACATTAATGAATCATGTATACAGGAGAGCCTTAAATAAAACAAATAAAATT AAACCATTACTTTTTCGGACTGAGAGCCCACAATAATTATTTGATACATGCATTTCAATATGTT TGAATCAGAACATCAGTTTAGTGTGTCTTTTAGACTCAGATGTATAACAATGAAAAAGAAGAAA ATTCCAACAAAAAAGCTAAAATTAAAACTAAAATAAACTACCTCTGGACCCTCCAATTGGAGGG CAGTATAATAGCTTGCATCATGTACAAGCACCTCTTGTTTGAGCCTTTTTCAAGAGCGCCCTCG AACCTTTACCCCTGCGTAAGCACATGCACAATCCTTGTTAGTGTTTCCAAGGGAATGTTAAAAC ATTCACAAGCTTGTTGCTTCAACTTCCCCCATAGACTCTTTCATAAGCTTTTAATTTTACCCAA AAAGACCTACCTTCCTTGAAGACACAAAGGAAGGTGGTAACCCCAAAGCTTGGTCATAGCAAAC CACTTTGCATGCCAAACATGAGTTCTCAGCCTCTTGGTTACATCCCCAGAAGTGCAAAAACCAT TCTCTGGGTTTTTCTTTAGTTCATATCTCCGATGAACACACCGAGGAAGCTTCTTTTGGTGATT CTCCTCCAAACCTGATTTGGCAAGGGCTTTATCAATTATTCCCAGTTTCTGCCTCTTTCTTCTG CACCCTTTTCTTGCAATTTGGTTATCAAACACAGTTTTCCTTCTTCTCTTGTTCTTTTGAGACC TATAATCACTGTTTACTCTATTTTCTATGATAGATTGAAGACTATGGAGTTCGAGAGCATGGGA TTCAGCATATTTCTGCAAATTGATTTTCCAAGGTGGTGGTGGTGTAGGTACTGAAACTTGAGGC TTTTTGGTTCCATCAGTAACCATGGTAAAGAACTAAGCAAAACCAAAAAAAATAAAAAAAAATT AGTTTACAACTTTGCATTGTACAGACACAAATTATGCTGTAAAGCGTAAATAAAACCCTTCACC TAATTGGACGATCCAATCAGAATAGAATTTACACCACCATAGTCCAAAAGGAACTACATGGGGC ATATAGAGATATTGTAAATGAAATATACTTTAGCAAGGCTCCTATCTGATTGGTTAAATAGTAT CATTTGTCTTTAGGAAACATAACAGGCAAACCAAAACTATCATAAAACGTTTCTCAATCCCTAA TTCACAGATTCCCACATTTCCTAACTAACCAAAAAATGGAGATAACCAAATCACTTGTCTCCAA CAACAATAATAAAAAGAACAAATGCACACCTTCCAGGTTAGTAGGGCCTGATGGTGTTGGACTG TTGGTACTGGTAAAGCTGTGCAACTCAAATGAATAAATTCTTTATCACCTAAATGCAAAAATGG GAA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.258613986

Conservation Information
Conserved circRNAs	NA
PMCS	0.258613986

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ma et al., 2021a

circRNA

Detail information of GLYMA_04G000100_circ_g.2

Address

Any questions?

Supported by