Plant Circular RNA Database

Detail information of 4_circ_ag.5

			
						 General Information
					
						CircRNA Name
						4_circ_ag.5
					
						ID in PlantcircBase
						ath_circ_033736
					
						Alias
						4:15043408-15047304
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr4: 15043408-15047304  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							AT4G30910_circ_g.1 AT4G30910_circ_g.2 4_circ_ag.3 AT4G30910_circ_g.4 4_circ_ag.6 AT4G30910_circ_g.7 4_circ_ag.8 4_circ_ag.9 4_circ_ag.10 AT4G30920_circ_g.1 AT4G30920_circ_g.2 AT4G30920_circ_g.3 AT4G30920_circ_g.4 AT4G30920_circ_g.5 AT4G30920_circ_g.6 						
					
						Support reads
						1/1
					
						Tissues
						root;leaf
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	4_circ_ag.5
ID in PlantcircBase	ath_circ_033736
Alias	4:15043408-15047304
Organism	Arabidpsis thaliana
Position	chr4: 15043408-15047304 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	find_circ; CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	AT4G30910_circ_g.1 AT4G30910_circ_g.2 4_circ_ag.3 AT4G30910_circ_g.4 4_circ_ag.6 AT4G30910_circ_g.7 4_circ_ag.8 4_circ_ag.9 4_circ_ag.10 AT4G30920_circ_g.1 AT4G30920_circ_g.2 AT4G30920_circ_g.3 AT4G30920_circ_g.4 AT4G30920_circ_g.5 AT4G30920_circ_g.6
Support reads	1/1
Tissues	root;leaf
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CGAAGAATCTTTGAAACAATACCTTATCGACACCCTGGTTGCAAGCATAAACTAAAGCATCTGC
AAGTGTTAGTCGACCTTCAGCATCGGTGTTGTTGACctcaattgtcttcccgtttgaggctgtg
atgacatctccaggtctcattccggtaccacttatcatattctcacaagctgcgacaataaagt
gcacctaa

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTCAATTGTCTTCCCGTTTGAGGCTGTGATGACATCTCCAGGTCTCATTCCGGTACCACTTATC
ATATTCTCACAAGCTGCGACAATAAAGTGCACCTAATTGTGCAAAGAAGCATTTGTTCAGGTAC
ATTCACTTAACTCAGAAACTCAAGCTCCGTGTGATAAACTTACCTCAACACCGGGAGGCTTAAT
TTCACCAATGGCTTTTGCAGCGCCAAGAACAGCAGCTGAACCTCCCACATCGATTTTCATGAGC
TCAATTATTAATTCAGGCCCAATTTTAATGTTGTAGCCACCGCTGTGAACAAAAACCAGATGGT
CAATAACCAATAAGTATAAAAGAAAGAGATTGATGCGGCAAACAGAAGACAACAGCTCTTGCGA
GTACCTGTCAAATGTCAATCCTTTTCCAACAAGAGCAAGTTTGGTTTTAACAGGGCCACTAGAA
GGTTTGTAGATAAGGTGGATGAAATGAGGTGGATTAGCTGAAGCAGCAGCTACAGCAAGATATG
AACCCATCTTCAATTCTTTGCATTGCTCCTCTTTCAAGATGTTTGCAGTCATGACATTACTGTA
CATGGAAGCCAGATTCGAGGCTTCCTCAGCTAGTACGGCTGTAAGATACAAAGCAGATTAGAGT
CAAATGTTTGAAATAAACTTCAATAGACATGATGCTCACATTATAAAAAACATGAGAAGTCTAA
GAGTATGATTATAATCCATACCAGGGGAGAGAACATTGGCTGGTGAATTAACAAGTTCTTTCGT
GAAAATTACGCCATAAGAAACATGTTCAGCATACTTAAGCTTGTTCTCTAGTTCAGGTCCAGTG
CCAAAGCCAATGAATACTACAGATTTGAGAGATGGTTTCTTTGACTCAGACTTATACCGACTGT
CTTCAAACAAACCAAGCACTGTGCCTGTCAAAAGTAAAAAACGATTCCACAAAAGGATCAGTTC
AAAAATGGTAATGAAACAAGCACTTCTCAAGGTTTACTAAAAGAAATCACAACCTGAAGCTATA
TCTGAAGCAGAACTGAGCTTAGATTCATCAGAAAAACTCTCAGAGGAGGCGAGAACAACTGCAA
CACTGCTAGCTTGAGAAGCTTTAGCAGCTGCAGCAACAGCCTCACCAAGACTCTGAAAAGCCGA
AGGGGTTGAAGCAGATTTTCCAAGACCAATCAAACCGACCCGCTTTGAGCCGAGACCCGGAAGC
CTAAGAACTGTTGACTGGCCAGGTTTCCCAGAAAAATCTTCCTCAGCCGAGACATCAGCTAGAA
GTCCACCCAAGTGGGCATCAAGCTTCTTCAGTATGGGGTTCTCGAACTTGGAGTTGGCATCCTT
AGCCATATCTTTCTCCGTCACTCCAACAGCGAGTATATCACCTTTCCATTCAGTCACGTCAATC
TCCTTCCCGGAAAATGAGATCTGATACAGAAAACTCGAGTAATCAGAATCCAGTTAAGCATCTG
GAAAGCTAATCTCTGACAAGACTTGACCATAATCGAAGTAAGCAAATCAGTGGATCATCTTAAT
CGGAAACAGTAAAGCGACGAATCTACAAAGCATTCACTAGTATCGAGTTTAAACACATAACAGC
AAAGTCAAACCTTAGGATGATCGACGGAGTTGGCCTGAGTAAGGCCAAGAGTAGCGTGTGCGAT
TGTATGAGCCGTGGCTTTAGAAGAGCAGTAGAGAGGCGTGATGGCGAAAGAGACTCTAAGGCGA
GACAGCAACTGGAATCGTACGAAACAAGAGGAGAGAGACGACGGAGAAGAGGAGAAAGAGCGGA
AATGGAAGCGAGAAGAAGAAGCACATGACGTTACCAAAGTGACCGCCATTTGAGAAGTCTCCAC
TGAGCTTAGCTTCTTTATATTTATTTATAAGGAGAAGAACAGAGTGGCTGATGCAGACATATAT
ATATATATATATATATATAGTATGAAATTAGAGTTATCTTAGAAAATTAGAGTGGCCCAGTCTC
TTCTTGCGTCCGCCCGCGTCCGACCGTCGTGTCTTGTTGACGATGATTATTCTTTTACTTGACT
CACTCACTATTGCTATTATCCGACCCGATCTTAACAATCTTGATTAGCTGTAGACTTCTTTTCA
AATTTTAATGTGATCATGTTTCACTATTACTAAACTTATCTTGATAACCATATCTGAAATACTT
ACTACTGTTATTTGTTGCCTTCAAATTTAAAGTTGTTTATACAAAACATAGTTTTGATACTATT
TATAGAAATTCAAATATTTCAAGGCATTCTTACACGAAGTGATAAAAGAAATTGAAAAACACGT
CAGTATTATCACTTTTGTAACTCATTTGTGGATCAATAGGTGAAATCCAATTAAAAATACATGA
TTTAATCTAATAACCAAACCAAATTTAGAAATCTCGATTAATTGATTTGGTATTCTTCCAATTA
AATTAATTAGACTTGGTTTAATAATTAAACCAAACCAAATTCTTATAATCTAGTTACACCACAC
AGACGTAATAATACACCAACAACGCAAATTGTCATTGGTTTCGGTTCTGGTCTTAACTAAATTA
AGAGTCATTGGTTTAGACTGGTTAAGATCCGGTTCAATAATCAACAACAAACACGGGAGATAAG
GTTCGCCGTTACCTTTCTCGGCGATTACTCTCGGTGGATCTGCTCGGGGCTCGATGAGGCGGTT
TAAGCTCACGGCAGTAAGGTCTCATAGCTCAACAATCAAAACCAAAACAAAGCACAGATCATAA
GAGAAAGCCAAAAACTTCCTGAGCAAGTTACATAATAGATCTAGGGTTTCCTTACCCTTAACGG
CCTTGGCGATGGACTACGACTACTCCGGTGACAGCGGTTGACATCCTGTGACTCGTGGTGTCAC
TCTCCGGTGACACACGGTGGCTGTAGTGGTGATGAACGGCGACTATCTCTCCTTCTCAACAACT
CACGGACCCATTCAAATACAACAACATGACGGGACACAGCAACAACGGTGGCTCAACTGTGTCT
CTCACGGTGGTTGTTGAATTTAAGTTTAGACTAGGTAAGCATACAACAACAAAACTAATCTTCT
GATTGATTTAACTTGTCATACTTAGTTGCACAAAAAAAAAAAACTTGTCCCACCACACAAAGCA
AAAACACAACTAGTTCACATCAGTCAGAGATCACCAGACTTCATCTTAAGAAGAAGAATGGTTC
TGTACCCACTCAACTAGTGTCGCAACTCCAAACCCAGTTGCAGCTTTCTTCTTCTCGTTCCACA
CTGGTCCAGCCATATCTATGTGCATCCACTCAACATCCTCGCTCACAAACTGCAACCATTAACC
AAACCCGGTTCTTCGTTAGAGAACAATAGCGTCAGTATTGAAATGTGTTCTTTTGTTTCCACTC
TTATGATATACTCACCTGTTTCAAGAAAAGAGCCGCGGTAATGGATCCACCTGCACGGCCTCCA
GTGTTAACCATATCTGCAACACCTGACTTCATCATCTCCCAGTAACTCTCTTCCATAGGCATTC
TCCATAACTTCTCTCCACTCCTCTCTGATGCAGCAATCACCTCCTTTGCAAGCTTATCACTAGG
TGTATATATGCCTGCAGAAAAACCAATAGTCAACCATCACGAAAGAATTTTATTCTGTCTTATT
TAAAACACAAGACTATGTACCTGCCATTGATGTTCCAAGAGCAATAATACAAGCCCCAGTCAAT
GTTGCAAGGTCAACAACCTGCAAATATTGTAATTCACAAGTTGAGACTTGAGAGAAAAACCAAC
AGAAAGAATGTATTAATAAGTCGAAGAATCTTTGAAACAATACCTTATCGACACCCTGGTTGCA
AGCATAAACTAAAGCATCTGCAAGTGTTAGTCGACCTTCAGCATCGGTGTTGTTGAC
						
					

			
		

Sequences
Splice junction sequence	CGAAGAATCTTTGAAACAATACCTTATCGACACCCTGGTTGCAAGCATAAACTAAAGCATCTGC AAGTGTTAGTCGACCTTCAGCATCGGTGTTGTTGACctcaattgtcttcccgtttgaggctgtg atgacatctccaggtctcattccggtaccacttatcatattctcacaagctgcgacaataaagt gcacctaa
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTCAATTGTCTTCCCGTTTGAGGCTGTGATGACATCTCCAGGTCTCATTCCGGTACCACTTATC ATATTCTCACAAGCTGCGACAATAAAGTGCACCTAATTGTGCAAAGAAGCATTTGTTCAGGTAC ATTCACTTAACTCAGAAACTCAAGCTCCGTGTGATAAACTTACCTCAACACCGGGAGGCTTAAT TTCACCAATGGCTTTTGCAGCGCCAAGAACAGCAGCTGAACCTCCCACATCGATTTTCATGAGC TCAATTATTAATTCAGGCCCAATTTTAATGTTGTAGCCACCGCTGTGAACAAAAACCAGATGGT CAATAACCAATAAGTATAAAAGAAAGAGATTGATGCGGCAAACAGAAGACAACAGCTCTTGCGA GTACCTGTCAAATGTCAATCCTTTTCCAACAAGAGCAAGTTTGGTTTTAACAGGGCCACTAGAA GGTTTGTAGATAAGGTGGATGAAATGAGGTGGATTAGCTGAAGCAGCAGCTACAGCAAGATATG AACCCATCTTCAATTCTTTGCATTGCTCCTCTTTCAAGATGTTTGCAGTCATGACATTACTGTA CATGGAAGCCAGATTCGAGGCTTCCTCAGCTAGTACGGCTGTAAGATACAAAGCAGATTAGAGT CAAATGTTTGAAATAAACTTCAATAGACATGATGCTCACATTATAAAAAACATGAGAAGTCTAA GAGTATGATTATAATCCATACCAGGGGAGAGAACATTGGCTGGTGAATTAACAAGTTCTTTCGT GAAAATTACGCCATAAGAAACATGTTCAGCATACTTAAGCTTGTTCTCTAGTTCAGGTCCAGTG CCAAAGCCAATGAATACTACAGATTTGAGAGATGGTTTCTTTGACTCAGACTTATACCGACTGT CTTCAAACAAACCAAGCACTGTGCCTGTCAAAAGTAAAAAACGATTCCACAAAAGGATCAGTTC AAAAATGGTAATGAAACAAGCACTTCTCAAGGTTTACTAAAAGAAATCACAACCTGAAGCTATA TCTGAAGCAGAACTGAGCTTAGATTCATCAGAAAAACTCTCAGAGGAGGCGAGAACAACTGCAA CACTGCTAGCTTGAGAAGCTTTAGCAGCTGCAGCAACAGCCTCACCAAGACTCTGAAAAGCCGA AGGGGTTGAAGCAGATTTTCCAAGACCAATCAAACCGACCCGCTTTGAGCCGAGACCCGGAAGC CTAAGAACTGTTGACTGGCCAGGTTTCCCAGAAAAATCTTCCTCAGCCGAGACATCAGCTAGAA GTCCACCCAAGTGGGCATCAAGCTTCTTCAGTATGGGGTTCTCGAACTTGGAGTTGGCATCCTT AGCCATATCTTTCTCCGTCACTCCAACAGCGAGTATATCACCTTTCCATTCAGTCACGTCAATC TCCTTCCCGGAAAATGAGATCTGATACAGAAAACTCGAGTAATCAGAATCCAGTTAAGCATCTG GAAAGCTAATCTCTGACAAGACTTGACCATAATCGAAGTAAGCAAATCAGTGGATCATCTTAAT CGGAAACAGTAAAGCGACGAATCTACAAAGCATTCACTAGTATCGAGTTTAAACACATAACAGC AAAGTCAAACCTTAGGATGATCGACGGAGTTGGCCTGAGTAAGGCCAAGAGTAGCGTGTGCGAT TGTATGAGCCGTGGCTTTAGAAGAGCAGTAGAGAGGCGTGATGGCGAAAGAGACTCTAAGGCGA GACAGCAACTGGAATCGTACGAAACAAGAGGAGAGAGACGACGGAGAAGAGGAGAAAGAGCGGA AATGGAAGCGAGAAGAAGAAGCACATGACGTTACCAAAGTGACCGCCATTTGAGAAGTCTCCAC TGAGCTTAGCTTCTTTATATTTATTTATAAGGAGAAGAACAGAGTGGCTGATGCAGACATATAT ATATATATATATATATATAGTATGAAATTAGAGTTATCTTAGAAAATTAGAGTGGCCCAGTCTC TTCTTGCGTCCGCCCGCGTCCGACCGTCGTGTCTTGTTGACGATGATTATTCTTTTACTTGACT CACTCACTATTGCTATTATCCGACCCGATCTTAACAATCTTGATTAGCTGTAGACTTCTTTTCA AATTTTAATGTGATCATGTTTCACTATTACTAAACTTATCTTGATAACCATATCTGAAATACTT ACTACTGTTATTTGTTGCCTTCAAATTTAAAGTTGTTTATACAAAACATAGTTTTGATACTATT TATAGAAATTCAAATATTTCAAGGCATTCTTACACGAAGTGATAAAAGAAATTGAAAAACACGT CAGTATTATCACTTTTGTAACTCATTTGTGGATCAATAGGTGAAATCCAATTAAAAATACATGA TTTAATCTAATAACCAAACCAAATTTAGAAATCTCGATTAATTGATTTGGTATTCTTCCAATTA AATTAATTAGACTTGGTTTAATAATTAAACCAAACCAAATTCTTATAATCTAGTTACACCACAC AGACGTAATAATACACCAACAACGCAAATTGTCATTGGTTTCGGTTCTGGTCTTAACTAAATTA AGAGTCATTGGTTTAGACTGGTTAAGATCCGGTTCAATAATCAACAACAAACACGGGAGATAAG GTTCGCCGTTACCTTTCTCGGCGATTACTCTCGGTGGATCTGCTCGGGGCTCGATGAGGCGGTT TAAGCTCACGGCAGTAAGGTCTCATAGCTCAACAATCAAAACCAAAACAAAGCACAGATCATAA GAGAAAGCCAAAAACTTCCTGAGCAAGTTACATAATAGATCTAGGGTTTCCTTACCCTTAACGG CCTTGGCGATGGACTACGACTACTCCGGTGACAGCGGTTGACATCCTGTGACTCGTGGTGTCAC TCTCCGGTGACACACGGTGGCTGTAGTGGTGATGAACGGCGACTATCTCTCCTTCTCAACAACT CACGGACCCATTCAAATACAACAACATGACGGGACACAGCAACAACGGTGGCTCAACTGTGTCT CTCACGGTGGTTGTTGAATTTAAGTTTAGACTAGGTAAGCATACAACAACAAAACTAATCTTCT GATTGATTTAACTTGTCATACTTAGTTGCACAAAAAAAAAAAACTTGTCCCACCACACAAAGCA AAAACACAACTAGTTCACATCAGTCAGAGATCACCAGACTTCATCTTAAGAAGAAGAATGGTTC TGTACCCACTCAACTAGTGTCGCAACTCCAAACCCAGTTGCAGCTTTCTTCTTCTCGTTCCACA CTGGTCCAGCCATATCTATGTGCATCCACTCAACATCCTCGCTCACAAACTGCAACCATTAACC AAACCCGGTTCTTCGTTAGAGAACAATAGCGTCAGTATTGAAATGTGTTCTTTTGTTTCCACTC TTATGATATACTCACCTGTTTCAAGAAAAGAGCCGCGGTAATGGATCCACCTGCACGGCCTCCA GTGTTAACCATATCTGCAACACCTGACTTCATCATCTCCCAGTAACTCTCTTCCATAGGCATTC TCCATAACTTCTCTCCACTCCTCTCTGATGCAGCAATCACCTCCTTTGCAAGCTTATCACTAGG TGTATATATGCCTGCAGAAAAACCAATAGTCAACCATCACGAAAGAATTTTATTCTGTCTTATT TAAAACACAAGACTATGTACCTGCCATTGATGTTCCAAGAGCAATAATACAAGCCCCAGTCAAT GTTGCAAGGTCAACAACCTGCAAATATTGTAATTCACAAGTTGAGACTTGAGAGAAAAACCAAC AGAAAGAATGTATTAATAAGTCGAAGAATCTTTGAAACAATACCTTATCGACACCCTGGTTGCA AGCATAAACTAAAGCATCTGCAAGTGTTAGTCGACCTTCAGCATCGGTGTTGTTGAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.243512876

Conservation Information
Conserved circRNAs	NA
PMCS	0.243512876

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							ath-miR822-3p 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	ath-miR822-3p
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of 4_circ_ag.5

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