Detail information of AT3G07160_circ_g.30


General Information
CircRNA Name AT3G07160_circ_g.30
ID in PlantcircBase ath_circ_020265
Alias NA
Organism Arabidpsis thaliana
Position chr3: 2278543-2278697  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT3G07160
Parent gene annotation Glucan synthase-like 10
Parent gene strand -
Alternative splicing AT3G07160_circ_g.29 AT3G07160_circ_g.31 AT3G07160_circ_g.32
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G07160.1:1
AT3G07160.2:1
AT3G07160.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCCTGTAAAATTCTTGTAGTCGAAGAATATCCTGACTTCTGTCTATGGTCCCAACCTCTCTTT
TTGCTAATTTTTGtcgtcagtgaaagcccccgactcacggagctgtttctcttcctccttcaac
gtgtcaacattgttcttttctctgtat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCGTCAGTGAAAGCCCCCGACTCACGGAGCTGTTTCTCTTCCTCCTTCAACGTGTCAACATTGT
TCTTTTCTCTGTATAGCCTGTAAAATTCTTGTAGTCGAAGAATATCCTGACTTCTGTCTATGGT
CCCAACCTCTCTTTTTGCTAATTTTTG
Conservation Information
Conserved circRNAs NA
PMCS 0.22315914
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017