Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d011355_circ_g.2 |
ID in PlantcircBase | zma_circ_009725 |
Alias | Zm08circ00056 |
Organism | Zea mays |
Position | chr8: 147968963-147971374 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d011355 |
Parent gene annotation |
Zinc finger CCCH domain-containing protein 37 |
Parent gene strand | - |
Alternative splicing | Zm00001d011355_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d011355_T003:8 Zm00001d011355_T013:9 Zm00001d011355_T004:9 Zm00001d011355_T006:9 Zm00001d011355_T011:9 Zm00001d011355_T012:9 Zm00001d011355_T005:9 Zm00001d011355_T001:9 Zm00001d011355_T016:9 Zm00001d011355_T008:7 Zm00001d011355_T010:9 Zm00001d011355_T007:9 Zm00001d011355_T002:9 Zm00001d011355_T017:9 Zm00001d011355_T014:8 Zm00001d011355_T018:9 Zm00001d011355_T015:9 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.100453569 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
147971181-147968965(-) |
Potential amino acid sequence |
MVNALGTGTNNESLIADSAVLPVRPSEPICVFYAKTGKCKFGAICKFNHPKDIKTSPLIAKETI YTATTDAADAPTEACNAKGLPIRQGEVDCSFYMKTGSCKYGSICRFNHPDRPGPAADIAFMVPL VQATLPSSAPIVPAVVEPLPMIYPQRPGETVCDFYMKTGSCKYSQKCKFHHPISRFAPHSKENG DPQQPATLASLPRREAPNVEDSYPERPGEPDCPYLLNNRCKFKSKCKFNHPKDMVNALGTGTNN ESLIADSAVLPVRPSEPICVFYAKTGKCKFGAICKFNHPKDIKTSPLIAKETIYTATTDAADAP TEACNAKGLPIRQGEVDCSFYMKTGSCKYGSICRFNHPDRPGPAADIAFMVPLVQATLPSSAPI VPAVVEPLPMIYPQRPGETVCDFYMKTGSCKYSQKCKFHHPISRFAPHSKENGDPQQPATLASL PRREAPNVEDSYPERPGEPDCPYLLNNRCKFKSKCKFNHPKDMVNALGTGTNNESLIADSAVLP VRPSEPICVFYAKTGKCKFGAICKFNHPKDIKTSPLIAKETIYTATTDAADAPTEACNAKGLPI RQGEVDCSFYMKTGSCKYGSICRFNHPDRPGPAADIAFMVPLVQATLPSSAPIVPAVVEPLPMI YPQRPGETVCDFYMKTGSCKYSQKCKFHHPISRFAPHSKENGDPQQPATLASLPRREAPNVEDS YPERPGEPDCPYLLNNRCKFKSKCKFNHPKDMVNALGTGTNNESLIADSAVLPVRPSEPICVFY AKTGKCKFGAICKFNHPKDIKTSPLIAKETIYTATTDAADAPTEACNAKGLPIRQGEVDCSFYM KTGSCKYGSICRFNHPDRPGPAADIAFMVPLVQATLPSSAPIVPAVVEPLPMIYPQRPGETVCD FYMKTGSCKYSQKCKFHHPISRFAPHSKENGDPQQPATLASLPRRE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020 |