Detail information of BGIOSGA016640_circ_g.1


General Information
CircRNA Name BGIOSGA016640_circ_g.1
ID in PlantcircBase osi_circ_014476
Alias Chr04:24848710_24850427(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 22769545-22771262  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA016640
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016640-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTGTTGCTAATGATAAGCTACTTGTTATTGGTGGCCAAGAAGGAGATTTTATGGCGAAACCT
GGATCACCTATATTTAAATGTGTTAGAAGAAGTGAGgcaaacaaaggaaaaaatatctataggt
tccacggacataaatgcaacctttgcagatttgccagcaccagaactacaatgggaggagatgg
ctgaagca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCAAACAAAGGAAAAAATATCTATAGGTTCCACGGACATAAATGCAACCTTTGCAGATTTGCCA
GCACCAGAACTACAATGGGAGGAGATGGCTGAAGCACCTGTGCCACGTTTGGATGGTGCTGCTA
TGCAAATTAAGAATCTCTTATATGTGTTTGCTGGATATGGTACCATTAACCATGTGAGGAAGCT
TCCCTGTTATCTCTCGCATCCAGTCATACTTTGTGCTCTTTTTCTTGTATTTATAAAATCTCTT
GCTGAAGAACAACATATAGCATGCAACATATTTAATTGGTGAGTTGGGGTTACAGCAACACATT
ATACTTGTTCCCTTTCAGCAATCAATGACCTAGATGTGTAATTGGACTTATCGTTTTGGATCAC
TCAAGTTGGCTACCTGCACCATTGTTTTTAATGAAATATAAATTCACATAATATTGTCAAGTTG
TATAGATGACCTGTGTTCCCTAGCTTGTTTAAACATGATCTTCCTTACTAAAACACAATTGAAG
TACTTGTGCTTTTGGTTAGCGTGATCCCATTATAATCATTTTTGGCTGAAAGTTTAATATTAAT
GGTGTGTGTATATATGGCTTAGTATTGCCAGATTGTGAATTAACCCAGTAATTCCTTGCCCTGC
TGATTTTGTTGGTACTTTTAAGTTTACCATAAGTTAATTCAAGATGCCATCAAGTTATTTAACC
TTTTCTAATGTTTTCCATGTATAGGTGCATTCTCATGTGGATATTTACAATTTCTCAGATAATA
CATGGGGTGGGAGGTTTGATATGCCAAAGGAAATGGCTCATTCACATTTGGGGATGGTTACAGA
TGGAAGATATGTTTATGTGGTAACAGGACAGTATGGTCCGCAATGTAGGGGGCCCACAGCACGA
AATTTTGTGCTGGACACTGAAACAAAAGAATGGCACGATTTGCCTCCATTGCCAGTTCCTAGGT
ACAAACAGTGTTGTATTTAGGCATTATTGTACTTGTATGGTCATGCACTCCCGTTAATCTTAAT
ACTACTTTTGAAGTTTGGATATTTGGTCTGTTGTATGCTGTCAAGGAAAAACAAATATTGTTTT
GAGCCCTTATTTGTTTCTTTCTTTATCCCAAATCTATTGTTCAGATATGCTCCAGCCACACAAC
TTTGGAGAGGCAGGCTTCATGTGATGGGTGGCAGCAAGGAGGATAGGCATGAACCTGGGCTTGA
ACATTGGAGCATTGCAGTAAAGGATGGGAAAGCCCTGGAAAACGAGTGGAGGAGTGAGGTACCA
ATCCCACGTGGAGGCCCTCATAGGTCTATAACTCCCCCTCCACATGATTTCTATTGTTGCCATT
TTTGTTGGAAAGTAATGTTGCTATACACCTGAATGGTCTTGATGTTTAGCATCTGTTGTATTCA
GATTTTTATGATGCCGCCCACAATATGTATGCTTCTAGGCTATTTCTTTGATCAAGTATCTAAA
TTAAAATTAGTTCTGGGCCAGAAATATGTTTGTACGCCATACAAAGTTCTTATGTGGCATATAA
GTATATAACCTGTTTCCGAGAATGGTCCTGTTGTTAGCTTAGCAGCTTAATCATGATTTTTCTC
TTTTGATACCAGGGCTTGTGTTGTTGCTAATGATAAGCTACTTGTTATTGGTGGCCAAGAAGGA
GATTTTATGGCGAAACCTGGATCACCTATATTTAAATGTGTTAGAAGAAGTGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021