Plant Circular RNA Database

Detail information of Os06g0347100_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os06g0347100_circ_g.2
					
						ID in PlantcircBase
						osa_circ_030776
					
						Alias
						Os_ciR1081
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 13947845-13951067  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os06g0347100						
					
						Parent gene annotation
						
							Similar to Acyl-coenzyme A oxidase 4, peroxisomal (EC 1.3.3.6) (
AOX 4) (Short- chain acyl-CoA oxidase) (SAOX) (AtCX4) (G6p) (AtG
6). (Os06t0347100-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os06g0347100_circ_g.1 Os06g0347100_circ_g.3 Os06g0347100_circ_g.4 Os06g0347100_circ_g.5 Os06g0347100_circ_g.6 Os06g0347100_circ_g.7 Os06g0347100_circ_g.8 Os06g0347100_circ_g.9 Os06g0347100_circ_g.10 Os06g0347100_circ_g.11 						
					
						Support reads
						19
					
						Tissues
						root
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0347100-01:6

General Information
CircRNA Name	Os06g0347100_circ_g.2
ID in PlantcircBase	osa_circ_030776
Alias	Os_ciR1081
Organism	Oryza sativa
Position	chr6: 13947845-13951067 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	find_circ
Parent gene	Os06g0347100
Parent gene annotation	Similar to Acyl-coenzyme A oxidase 4, peroxisomal (EC 1.3.3.6) ( AOX 4) (Short- chain acyl-CoA oxidase) (SAOX) (AtCX4) (G6p) (AtG 6). (Os06t0347100-01)
Parent gene strand	+
Alternative splicing	Os06g0347100_circ_g.1 Os06g0347100_circ_g.3 Os06g0347100_circ_g.4 Os06g0347100_circ_g.5 Os06g0347100_circ_g.6 Os06g0347100_circ_g.7 Os06g0347100_circ_g.8 Os06g0347100_circ_g.9 Os06g0347100_circ_g.10 Os06g0347100_circ_g.11
Support reads	19
Tissues	root
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0347100-01:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CACCAAGTAACAGCTAGCTAGCGCGTATAAGAAGGAACGTCCATGCGACCAGGCCCGGTGTTAA
AGCACAAATTTCTAGGCTAGCTAGCTGTCTCTGAAGgttccaggagggtggatcctcaatgggc
agaagcgatggccggccaacggcagttttgcggatgtgttcgtcgttcttgcctgcaataccag
taataatc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 121
Transcript exons: 13947845-13947903,13951006-13951067
GTTCCAGGAGGGTGGATCCTCAATGGGCAGAAGCGATGGCCGGCCAACGGCAGTTTTGCGTCCA
TGCGACCAGGCCCGGTGTTAAAGCACAAATTTCTAGGCTAGCTAGCTGTCTCTGAAG
						
					

						Genomic sequence
						
							GTTCCAGGAGGGTGGATCCTCAATGGGCAGAAGCGATGGCCGGCCAACGGCAGTTTTGCGGATG
TGTTCGTCGTTCTTGCCTGCAATACCAGTAATAATCAGATTAACGGGTAACCAAAAGCCATATG
TCTACACATTACTTTAGTGGGTCTTACTATGGAAAAAGAGATAAGAGTTATCGACACTGTGAAA
TGTTTTACTGGACTGTTGGTTTTATACATTCGTTTACCTGGAACTCACTGCAGGTTCATTGTGA
ATGGTGGGTCCCCAGGGCTTAAGATCAGCAAGATCGAGAACAAGACGTCGCTGAGGGTTGTCCA
GAACTGTGACATTCTGCTGGAGGACGTGTTCGTCCCTGACGATGACCGTCTTCCCGGCGCCAAC
TCTTTCCAAGACCTAGTGAAGGTAAAAGCTACAAACTTACTCCATATATTCGTCCTAAAATAAA
AAAAAAACTTTAGAGTTTCTCATGCGGATTAAAGGAGAGTGAAAATTAAATAAGGTCAGTGGTA
ATCGGTCGAGTCGAGAAAGTAGGTGGAGAAAATTAAATGAGAATGATTGATATTGGTTGAGACG
AATAGTTAAGAAAGTAAACTAAGAAATAGCTATATTTTACAATAAAATTTAAACACTAAAGGTA
TCTATATCTTGGAGTGAACGGAGTACTCACTTTCGCTTCCTAGATATATCCACACACCATAAGT
GATGTAGATTTGACAGACTTTGCTAGCTTGCTACTGATATTGGCTGTTTTTCTGCATACAGGCC
CTCTCTTTCTCTTGCGTCATCGTTGCCTGGATCAGCATCGGCATTGCAGCAGGGGTTTATGATG
CATGCTTACGGTGCAAATTATGTCAAACTTATAGCGTTCCATAATAACTGATATTGAGCATTAT
TCACATTTGAACATTGACCACTCATCTTTTATTAAATTCTTTTACAAACACTAAAAAGATGCCG
CGTAATTAAAAGGTGGGGTAGTATACCCTAAATATAAGCATAAAACATATGTTTACTTTGTACT
AATAATTACGTGTAATTAATGGTCTAAGTTTAAATGAAAATAATATTATCAATTACTCCCTCCG
TCAAATTTTGTGATCCCGAGATACTCTTTCATTCCCCATCTATGTATAGTTTAATCTACACCTA
CCACTTTTGTACTAGTTTGATCCACATCTATCAATTCTTGTACTTCTCCTATTTCAAAATATAA
AACACATCTACTTTCCTTAGAGTTTTCATAATATAAATCATACATCCATGTATGCAATTAACTA
GCACCTCTTCTCCACTAAATTATTATTTTTTAACCATTTCACTCTCAAAATCTCTAATTCTATT
GGGTGCGTGCATTGTATTTATTAATTAGGATGATTCTAACAATGAGGTGATAATAATTATTTCT
TGGTCTTTGAGTTAAGGGTGATTATAACTGATATTTTGGAATGGAGAGAGTACTAATTTATTCC
ATCTCCTAATCACTTTTTTCATCAACTTTTATTACTTGCTTAATCTTTGTAAAAAGGATAGTAA
TCCCTTAAATTACAGGACGGAGGGAGCAGAAGAAGTTTTACATAGCAACCACACTAACAGCATG
ATTTGATCGAAATCCATCCTCACCTTACACATATTCACACACCGCCCATGTTTGTAGGTATCTG
GGGGAGAGGAAGCAGTTCGGGGCGCCATTAGCGGCGTTCCAGCTGAACCAGGAGAAGCTAGTGA
GGATGCTGGGCAACATCCAGGCGATGTGGCTCCTCGGCTGGCGTCTCTGCAAGCTGCACGATTC
CGGCAGGATGACCACTGGCCAGGCCAGCCTGGGGAAGGTTTAAACACTTGCTTGTCTTACAACC
CGTTGGATGAAGAACCATACTGTTTATTTTGAAATCAACCAAACTGATAGAATTGTGACCCTAC
TCCATTTTTTGTTCAAAGGCATGGATCACAAAGCAGGCACGGGAGACGGTCGCCTTGGGCAGGG
AGTTGCTCGGTGGCAACGGCATCGTCACCGATTTTCACGTCGGCAAGGTCATCAATTACCCTCG
TCAATGATTTGTTAATTTACCTCGTAATATAATGTTCATACTACAACGTATAGTTGGTTCTGTT
GTCGAAATAGTACTACTACTACAGAAATAATGATCGTGCCTTCAATTAATTGGAGCATATTCTC
ATAAGTACTTACATATATAAGTTCTGCTTTGTATCATTAATTTGTCAGTCTTTTTTTCTTGTGT
ATTTTGGTCTCAATTTGCACAATATATATAGCATTAACCTGCAGAATATAAAAAATATAGCTTT
TGTTTCAATTTATTGAAACATTTTTGTTTGTTTCATTCTTTTTACGTTCTGCATTAACCTAGGC
GCTCCGTTGAGCTGATGAGGATCATAGTATTTTATTTAATTTATATTAGTACGGATAGTAGGAA
TCATAGTTTTCTTTTAGTAAAGTACATGGATAGCAATTAAACTTGTCATGTTGTATCAACCAAT
GGCAGATCCAGAAATTTAGTTCAATGTGTCATAACGTGTCTATCGGTGTCATAGCATACTAATT
TTATTTAGAATATAATATTATAATATATGAATAAGCATTTTAAGCATAGCTCTTGCCCAAAGAG
ATTGGTGTTGCCTGATACCGGTGTAATACCACTGTAGATCCGCCCATACTCATCTTAAAAATAC
ATAATTAAGTTTTGGAACATTGTTGAAGTAAGTCATCTAGCTAGGTTTGAAACTATATATACCA
CATGTAACATGCCTTTCATATCCCTGCGTGGCTGATACTTCACCGAAAGGGTTACGTGTTATAC
TTCAATTGTAATATGCAATTGAACTTTGGTACATGGATCTGAATTTTCAAAGTTTATTAGAACC
TAGATAATATAACTAACAGGTTTAAGTATACCACCGATTAATATATTATACCCTTCATTTTAGT
TCTAATAAATGCACTTATCTCTTTCACGCAGGCATTCTGCGACATGGAATCCATATACACGTAT
GAGGGCAGCTACGAAGTAAACGTGCTCGTCGCTGCCCGAGAGATCACGGGCATCGCCAGCATTA
GGCCGACTAGCCGGCTCTAGTTGCTGAACATCGTGCTGTGCACATATGGCACACCAAGTAACAG
CTAGCTAGCGCGTATAAGAAGGAACGTCCATGCGACCAGGCCCGGTGTTAAAGCACAAATTTCT
AGGCTAGCTAGCTGTCTCTGAAG
						
					

			
		

Sequences
Splice junction sequence	CACCAAGTAACAGCTAGCTAGCGCGTATAAGAAGGAACGTCCATGCGACCAGGCCCGGTGTTAA AGCACAAATTTCTAGGCTAGCTAGCTGTCTCTGAAGgttccaggagggtggatcctcaatgggc agaagcgatggccggccaacggcagttttgcggatgtgttcgtcgttcttgcctgcaataccag taataatc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 121 Transcript exons: 13947845-13947903,13951006-13951067 GTTCCAGGAGGGTGGATCCTCAATGGGCAGAAGCGATGGCCGGCCAACGGCAGTTTTGCGTCCA TGCGACCAGGCCCGGTGTTAAAGCACAAATTTCTAGGCTAGCTAGCTGTCTCTGAAG
Genomic sequence	GTTCCAGGAGGGTGGATCCTCAATGGGCAGAAGCGATGGCCGGCCAACGGCAGTTTTGCGGATG TGTTCGTCGTTCTTGCCTGCAATACCAGTAATAATCAGATTAACGGGTAACCAAAAGCCATATG TCTACACATTACTTTAGTGGGTCTTACTATGGAAAAAGAGATAAGAGTTATCGACACTGTGAAA TGTTTTACTGGACTGTTGGTTTTATACATTCGTTTACCTGGAACTCACTGCAGGTTCATTGTGA ATGGTGGGTCCCCAGGGCTTAAGATCAGCAAGATCGAGAACAAGACGTCGCTGAGGGTTGTCCA GAACTGTGACATTCTGCTGGAGGACGTGTTCGTCCCTGACGATGACCGTCTTCCCGGCGCCAAC TCTTTCCAAGACCTAGTGAAGGTAAAAGCTACAAACTTACTCCATATATTCGTCCTAAAATAAA AAAAAAACTTTAGAGTTTCTCATGCGGATTAAAGGAGAGTGAAAATTAAATAAGGTCAGTGGTA ATCGGTCGAGTCGAGAAAGTAGGTGGAGAAAATTAAATGAGAATGATTGATATTGGTTGAGACG AATAGTTAAGAAAGTAAACTAAGAAATAGCTATATTTTACAATAAAATTTAAACACTAAAGGTA TCTATATCTTGGAGTGAACGGAGTACTCACTTTCGCTTCCTAGATATATCCACACACCATAAGT GATGTAGATTTGACAGACTTTGCTAGCTTGCTACTGATATTGGCTGTTTTTCTGCATACAGGCC CTCTCTTTCTCTTGCGTCATCGTTGCCTGGATCAGCATCGGCATTGCAGCAGGGGTTTATGATG CATGCTTACGGTGCAAATTATGTCAAACTTATAGCGTTCCATAATAACTGATATTGAGCATTAT TCACATTTGAACATTGACCACTCATCTTTTATTAAATTCTTTTACAAACACTAAAAAGATGCCG CGTAATTAAAAGGTGGGGTAGTATACCCTAAATATAAGCATAAAACATATGTTTACTTTGTACT AATAATTACGTGTAATTAATGGTCTAAGTTTAAATGAAAATAATATTATCAATTACTCCCTCCG TCAAATTTTGTGATCCCGAGATACTCTTTCATTCCCCATCTATGTATAGTTTAATCTACACCTA CCACTTTTGTACTAGTTTGATCCACATCTATCAATTCTTGTACTTCTCCTATTTCAAAATATAA AACACATCTACTTTCCTTAGAGTTTTCATAATATAAATCATACATCCATGTATGCAATTAACTA GCACCTCTTCTCCACTAAATTATTATTTTTTAACCATTTCACTCTCAAAATCTCTAATTCTATT GGGTGCGTGCATTGTATTTATTAATTAGGATGATTCTAACAATGAGGTGATAATAATTATTTCT TGGTCTTTGAGTTAAGGGTGATTATAACTGATATTTTGGAATGGAGAGAGTACTAATTTATTCC ATCTCCTAATCACTTTTTTCATCAACTTTTATTACTTGCTTAATCTTTGTAAAAAGGATAGTAA TCCCTTAAATTACAGGACGGAGGGAGCAGAAGAAGTTTTACATAGCAACCACACTAACAGCATG ATTTGATCGAAATCCATCCTCACCTTACACATATTCACACACCGCCCATGTTTGTAGGTATCTG GGGGAGAGGAAGCAGTTCGGGGCGCCATTAGCGGCGTTCCAGCTGAACCAGGAGAAGCTAGTGA GGATGCTGGGCAACATCCAGGCGATGTGGCTCCTCGGCTGGCGTCTCTGCAAGCTGCACGATTC CGGCAGGATGACCACTGGCCAGGCCAGCCTGGGGAAGGTTTAAACACTTGCTTGTCTTACAACC CGTTGGATGAAGAACCATACTGTTTATTTTGAAATCAACCAAACTGATAGAATTGTGACCCTAC TCCATTTTTTGTTCAAAGGCATGGATCACAAAGCAGGCACGGGAGACGGTCGCCTTGGGCAGGG AGTTGCTCGGTGGCAACGGCATCGTCACCGATTTTCACGTCGGCAAGGTCATCAATTACCCTCG TCAATGATTTGTTAATTTACCTCGTAATATAATGTTCATACTACAACGTATAGTTGGTTCTGTT GTCGAAATAGTACTACTACTACAGAAATAATGATCGTGCCTTCAATTAATTGGAGCATATTCTC ATAAGTACTTACATATATAAGTTCTGCTTTGTATCATTAATTTGTCAGTCTTTTTTTCTTGTGT ATTTTGGTCTCAATTTGCACAATATATATAGCATTAACCTGCAGAATATAAAAAATATAGCTTT TGTTTCAATTTATTGAAACATTTTTGTTTGTTTCATTCTTTTTACGTTCTGCATTAACCTAGGC GCTCCGTTGAGCTGATGAGGATCATAGTATTTTATTTAATTTATATTAGTACGGATAGTAGGAA TCATAGTTTTCTTTTAGTAAAGTACATGGATAGCAATTAAACTTGTCATGTTGTATCAACCAAT GGCAGATCCAGAAATTTAGTTCAATGTGTCATAACGTGTCTATCGGTGTCATAGCATACTAATT TTATTTAGAATATAATATTATAATATATGAATAAGCATTTTAAGCATAGCTCTTGCCCAAAGAG ATTGGTGTTGCCTGATACCGGTGTAATACCACTGTAGATCCGCCCATACTCATCTTAAAAATAC ATAATTAAGTTTTGGAACATTGTTGAAGTAAGTCATCTAGCTAGGTTTGAAACTATATATACCA CATGTAACATGCCTTTCATATCCCTGCGTGGCTGATACTTCACCGAAAGGGTTACGTGTTATAC TTCAATTGTAATATGCAATTGAACTTTGGTACATGGATCTGAATTTTCAAAGTTTATTAGAACC TAGATAATATAACTAACAGGTTTAAGTATACCACCGATTAATATATTATACCCTTCATTTTAGT TCTAATAAATGCACTTATCTCTTTCACGCAGGCATTCTGCGACATGGAATCCATATACACGTAT GAGGGCAGCTACGAAGTAAACGTGCTCGTCGCTGCCCGAGAGATCACGGGCATCGCCAGCATTA GGCCGACTAGCCGGCTCTAGTTGCTGAACATCGTGCTGTGCACATATGGCACACCAAGTAACAG CTAGCTAGCGCGTATAAGAAGGAACGTCCATGCGACCAGGCCCGGTGTTAAAGCACAAATTTCT AGGCTAGCTAGCTGTCTCTGAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_006708* osi_circ_016161 osi_circ_006709* 						
					
						PMCS
						0.586600878

Conservation Information
Conserved circRNAs	osi_circ_006708* osi_circ_016161 osi_circ_006709*
PMCS	0.586600878

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os06g0347100_circ_g.2

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