Detail information of BGIOSGA009441_circ_ig.1


General Information
CircRNA Name BGIOSGA009441_circ_ig.1
ID in PlantcircBase osi_circ_013895
Alias Chr03:38694312_38694463(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 40092540-40092691  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-GA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCATTCCAACATCCATCCTAAACGAACAACACGAGACGTATCTACGGATATTGAGGGACCTAA
GGCAATTTTCTTcccttgtataatccggaggagaccgtccaaaatgaaacagtggcagcaatca
aaatccagagctctatgtataaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCTTGTATAATCCGGAGGAGACCGTCCAAAATGAAACAGTGGCAGCAATCAAAATCCAGAGCT
CTATGTATAAAAATCATTCCAACATCCATCCTAAACGAACAACACGAGACGTATCTACGGATAT
TGAGGGACCTAAGGCAATTTTCTT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021