Detail information of AT5G14580_circ_g.2


General Information
CircRNA Name AT5G14580_circ_g.2
ID in PlantcircBase ath_circ_038254
Alias NA
Organism Arabidpsis thaliana
Position chr5: 4698734-4701742  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT5G14580
Parent gene annotation Polyribonucleotide nucleotidyltransferase 2, mitochondrial
Parent gene strand -
Alternative splicing AT5G14580_circ_g.1 AT5G14580_circ_g.3 AT5G14580_circ_g.4
Support reads 3
Tissues seedlings
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT5G14580.1:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCTAAAGTTTTATCAGAAAGCATGGACAATTTGTACTCCTTCTTTTGTTTCCCAGCTTTTTC
TGCCAATCTAATTTGGGGATCAAGGTACTTGACAGCtggttcatgggatagctcagacatatgt
agtagaccttgctgaccaccagggaactcaacaaatgcaccatactcttttatagatgacactg
tgcctttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGGTTCATGGGATAGCTCAGACATATGTAGTAGACCTTGCTGACCACCAGGGAACTCAACAAAT
GCACCATACTCTTTTATAGATGACACTGTGCCTTTGTACACACCACCAACAACTAGTTCACGAC
CAATGATGAAGTCAACCTGAGGACATGCATAAAATCAGAATTCATGGAAAATCATTGATCAATT
AAAAGCTGAATTGACTGAAAGATACTTGTTCTTGGGCCTTTTCCATCACATCCTGATTCTTGGC
AACAATAGTTAATGTTCCATTATCAATAGACAATCTTGCACCTAAACAAAAAAACTTATTTATC
AGATCTTCAAAGCAAACTATAAGAAAGCAAGTGGATATTATTCATAAGTTTATGAATTTCATCT
TGAAACTACTTTCTTAAAAGCACTTAAATTTTTCAATTCAAACGAGTTATTCAATTCCTTAGTC
TTTAAAGGTCACAAGAACTAAGCTGTTAACAATTAAAGTTGAAGTCAAGAAATCACCTGTTTCC
ACTTCAATCTTTCTTTTGAGTACACCCATAGGTCCGATCAAGGTACGAAGTGAGTCATTGGAGT
ACTTGAGCGTTGCTGCAAGACGGACATAATTTTGGAGTTTGAGCAGGGGAAATTCTATTAGCTA
AGGTTAACGAAAAGACAAGTGGGAAAAAAACCTAGCCGAGGAGAGTAAGCCCCATCCTGGCCTC
GTGGGGAATTTATGTTTCTCTCCATGTGGTCAAGAATCTGAAGACGGGCTTCACGTGCATTTTC
TAAGGATTCACAAACTATATCCAACGGTATTCCAGCTGGCTTTATATCCAGCTGAATTGCTGTC
ACACCATCTCGTGTGCCAGCAATCTTGAAATCCATATCTCCAAGATGATCTTCCAAACCCTGAG
AAGTCATTGTATGCAGTTCTATAAAATCCATTTTAGCAACTTAACTCTACTCATGGTTTAGACA
ACAACAGTTAAATTAACTACTGCACTGCCACACATTTCAGTTTCATGATTATTCACATAACTAA
CCATATAAAAATAAAGACAACAAATTAGAATAAGAGAACTCACGAGAATATCGGTTACAATACG
GTAGTCCTTTATTTCACCACTTGATGGATCTACATCGGTGATAAGACCAACAGATACACCCGCA
ACATGAGCTCGCAGAGGAATTCCAGCATCCATCAATGCCATACTACCTGAGAAGCGGAACACCT
TTCATTATGAAGGTAAAATAGAAACATATGATAGTTTGCACTGGCTTGCAAAAACATAATACAA
TCTCGTCTGTGAGTGACAATAAATACCTCCACAAACGCTTGCCATCGACGTGGATCCATCTGAG
GACATTACTTCTGAATTTATACGAATGGTATAAGGAAAAGCCTCTTCAGGGGGCAATACAGCAA
GCAATGCTTTCTCAGCAAGTGTTCCTACAGAAAATGTAAATCACAGTCAAGCATAAAGCACAAA
AGCATTCCCTTAGATAACAAAAAAACACTTCAAAGAAAGTTAAGACAAAATAGCCATCCTTGTT
CTATTATTAGCTAGAGAGAAAGATGATATGAACGACCAGATAAGGAAAATTGAGGATTAACTTT
ACCAGCAATATTTTGTTTGAAAAATGTGAATAAGGACTTTACATGCAAATAGAGAAAGGAAACC
AAAGACTTTACCATGACCAACTTCACGCCTGTTAAGGCCTCCTCGTTTTCCGACTTCATTTGTA
CAATATGGAGGAAAGCTGTAGTGAAGCATGAATCTCTTCTTCGGGGGGCCAACAAGAGAATCCA
AGCTTTGTGCTTCTGCTGGGGCTCCAAGTGTTACAGTACAGAGCACCTTTTAACACATACAAAA
CATCTTAAAGCAAGATTCTCATTAAATGCAGTGAACAGATTAAGCTTGTCTTTAACACTTCAGG
CCAACAACTTTTGAAGCGACAAAAAATGAAACTAAGCTAGGAAAGCAACCCTCAGAAGTGATAC
AAAGTACAGAGTAATGTCATTTCTTACAATATAGAAATTCGGGTTTTCTTTTAACCTTCTGCTA
CCTAATACCCTGAGATTATTCTTTTTTTTGTTTGGTTCAAAAGGTTTAATTTGATAGGCGTTAC
TGGGAAAAAGTTTCAGGACGAACCTGCGTATCTCCACGTGAGAAAAGTGCTGATCCATGCAGCG
CAGGTAAGTAATGCGATTCGCAGTAGATGGGCCTAACTTCATCAACATGTCTCCCGTCGACTCG
AAATCCATCTGATATCATCCTTGAACGGACTACCTGATAATTTAGTTAAAGGGACAAAGTAGTA
AGACATGGAAGAATAGGACAAATACAAAAGCCTATAACACTTTACTAGTGACTGTCTATGCAAT
CTCTGAAAGCTCTTAAGAACCATACATCTTAATGTGTCTCAACATGAAAAAGAGCATCTCAACT
ATCTCAGAAACAAAGAACGAACCAACTATTTTTACAAACATCGTAGAGTCTGGGCCTCTATATA
TTAGACAAAAAAAAAGTTGATATTGCTATTCAATTATGAATATTTTTAATTATCTGATTCAAGC
ACTAGTTTTTCTGTCAAGTTTATCAGAACAGGATCGCCCAAAACAAAAGCAAAGAGGTACAAAA
TATATTTCAAAATATTGATTTACAAAGCTTACCTTCTTTCTCACTGTATCAACAGCCTTTGGAA
GGATGCTCAAGCTTTCTTGATCACCCTCTTCTTCAAATACCTTTCTTACATCTTTTCCAATGTT
ATCTAGAGCCTCTCCACGTTCAAACTGGAGATGTAAAATTATCAAGCTAGCAGCTGAGAAACAA
ATTTTGCGATGGAAACAAAGCGAGCACGCACCTTTCCATATGAAGGGTCGGTAAAGACGGATTC
AATACGCGTTGCAGCCAAGTCAGCCACTTTTTCTAAAGTTTTATCAGAAAGCATGGACAATTTG
TACTCCTTCTTTTGTTTCCCAGCTTTTTCTGCCAATCTAATTTGGGGATCAAGGTACTTGACAG
C
Conservation Information
Conserved circRNAs NA
PMCS 0.118486274
Functional Information
Coding potential Y
Potential coding position 4701668-4698736(-)
Potential amino acid sequence MLSDKTLEKVADLAATRIESVFTDPSYGKFERGEALDNIGKDVRKVFEEEGDQESLSILPKAVD
TVRKKVVRSRMISDGFRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPAEA
QSLDSLVGPPKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLPPEEAFPYTIR
INSEVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPSSGEIKDYRIVTDILG
LEDHLGDMDFKIAGTRDGVTAIQLDIKPAGIPLDIVCESLENAREARLQILDHMERNINSPRGQ
DGAYSPRLATLKYSNDSLRTLIGPMGVLKRKIEVETGARLSIDNGTLTIVAKNQDVMEKAQEQV
DFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGGQQGLLHMSELSHEPAVKYLDPQIRLAEKAGK
QKKEYKLSMLSDKTLEKVADLAATRIESVFTDPSYGKFERGEALDNIGKDVRKVFEEEGDQESL
SILPKAVDTVRKKVVRSRMISDGFRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTV
TLGAPAEAQSLDSLVGPPKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLPPE
EAFPYTIRINSEVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPSSGEIKDY
RIVTDILGLEDHLGDMDFKIAGTRDGVTAIQLDIKPAGIPLDIVCESLENAREARLQILDHMER
NINSPRGQDGAYSPRLATLKYSNDSLRTLIGPMGVLKRKIEVETGARLSIDNGTLTIVAKNQDV
MEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGGQQGLLHMSELSHEPAVKYLDPQI
RLAEKAGKQKKEYKLSMLSDKTLEKVADLAATRIESVFTDPSYGKFERGEALDNIGKDVRKVFE
EEGDQESLSILPKAVDTVRKKVVRSRMISDGFRVDGRHVDEVRPIYCESHYLPALHGSALFSRG
DTQVLCTVTLGAPAEAQSLDSLVGPPKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKA
LLAVLPPEEAFPYTIRINSEVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDP
SSGEIKDYRIVTDILGLEDHLGDMDFKIAGTRDGVTAIQLDIKPAGIPLDIVCESLENAREARL
QILDHMERNINSPRGQDGAYSPRLATLKYSNDSLRTLIGPMGVLKRKIEVETGARLSIDNGTLT
IVAKNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGGQQGLLHMSELSHEPA
VKYLDPQIRLAEKAGKQKKEYKLSMLSDKTLEKVADLAATRIESVFTDPSYGKFERGEALDNIG
KDVRKVFEEEGDQESLSILPKAVDTVRKKVVRSRMISDGFRVDGRHVDEVRPIYCESHYLPALH
GSALFSRGDTQVLCTVTLGAPAEAQSLDSLVGPPKKRFMLHYSFPPYCTNEVGKRGGLNRREVG
HGTLAEKALLAVLPPEEAFPYTIRINSEVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSV
GLITDVDPSSGEIKDYRIVTDILGLEDHLGDMDFKIAGTRDGVTAIQLDIKPAGIPLDIVCESL
ENAREARLQILDHMERNINSPRGQDGAYSPRLATLKYSNDSLRTLIGPMGVLKRKIEVETGARL
SIDNGTLTIVAKNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGGQQGLLHM
SELSHEP(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Pan et al., 2017