Plant Circular RNA Database

Detail information of Zm00001d002817_circ_g.1

			
						 General Information
					
						CircRNA Name
						Zm00001d002817_circ_g.1
					
						ID in PlantcircBase
						zma_circ_007103
					
						Alias
						Zm02circ00026
					
						Organism
						
							Zea mays						
					
						Position
						
							chr2: 23521843-23524293  JBrowse»						
					
						Reference genome
						
							AGPv4.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							Zm00001d002817						
					
						Parent gene annotation
						
							Kinesin-like protein KIN-7G
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						leaf, endosperm
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Zm00001d002817_T031:6
Zm00001d002817_T027:9
Zm00001d002817_T018:9
Zm00001d002817_T001:9
Zm00001d002817_T003:9
Zm00001d002817_T033:10
Zm00001d002817_T040:2
Zm00001d002817_T029:9
Zm00001d002817_T023:10
Zm00001d002817_T008:9
Zm00001d002817_T026:10
Zm00001d002817_T030:9
Zm00001d002817_T006:9
Zm00001d002817_T035:10
Zm00001d002817_T032:10
Zm00001d002817_T024:10
Zm00001d002817_T036:8
Zm00001d002817_T022:8
Zm00001d002817_T019:9
Zm00001d002817_T039:9
Zm00001d002817_T005:7
Zm00001d002817_T016:9
Zm00001d002817_T009:9
Zm00001d002817_T025:10
Zm00001d002817_T038:8
Zm00001d002817_T004:9
Zm00001d002817_T034:10
Zm00001d002817_T010:9
Zm00001d002817_T007:9

General Information
CircRNA Name	Zm00001d002817_circ_g.1
ID in PlantcircBase	zma_circ_007103
Alias	Zm02circ00026
Organism	Zea mays
Position	chr2: 23521843-23524293 JBrowse»
Reference genome	AGPv4.38
Type	ue-circRNA
Identification method	CIRI2
Parent gene	Zm00001d002817
Parent gene annotation	Kinesin-like protein KIN-7G
Parent gene strand	+
Alternative splicing	NA
Support reads	NA
Tissues	leaf, endosperm
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d002817_T031:6 Zm00001d002817_T027:9 Zm00001d002817_T018:9 Zm00001d002817_T001:9 Zm00001d002817_T003:9 Zm00001d002817_T033:10 Zm00001d002817_T040:2 Zm00001d002817_T029:9 Zm00001d002817_T023:10 Zm00001d002817_T008:9 Zm00001d002817_T026:10 Zm00001d002817_T030:9 Zm00001d002817_T006:9 Zm00001d002817_T035:10 Zm00001d002817_T032:10 Zm00001d002817_T024:10 Zm00001d002817_T036:8 Zm00001d002817_T022:8 Zm00001d002817_T019:9 Zm00001d002817_T039:9 Zm00001d002817_T005:7 Zm00001d002817_T016:9 Zm00001d002817_T009:9 Zm00001d002817_T025:10 Zm00001d002817_T038:8 Zm00001d002817_T004:9 Zm00001d002817_T034:10 Zm00001d002817_T010:9 Zm00001d002817_T007:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ACAAAAAGAACTTGCAAGGTTGGAAAGTGAATTGCGATGCCCAGCTTCATATCCTGGTCTTGAA
GCATTAGTGAAGGAAAAAGATAATCAAATCCTGGAGatggcgtagagggggcagggaacagcgt
agaggagggggagtaagaaaggagaggacacacacatacacagagagcgagagagcgagcgaga
gagagaga

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							ATGGCGTAGAGGGGGCAGGGAACAGCGTAGAGGAGGGGGAGTAAGAAAGGAGAGGACACACACA
TACACAGAGAGCGAGAGAGCGAGCGAGAGAGAGAGATAGATGGGGGCGATTGGAGGTGACGAGC
AGGTGCAGTTGGACAATGTGGATGGGGCCGAGGTGGCCAATGACGGCGGTGCAGGTGCTGCGGG
AAGGCTGGAGAAGATACTGGTCTCTGTGAGGCTGAGACCGCTCAGCGACAAGGAGATTGCAAGG
AGGGACCCGGCGGAGTGGGAGTGCATCAACGACACTACCATCATCTCCCGGAGCACCTTCCCGG
ACCGGCCTACTGCTCCGACTACGTATTCATTTGGTTAGCCCTTTGCAAATCAGGCTTCTTTTAT
TCATTTGGTCTTCTGGACGCAGCATTTCATCATCTCTGAAGGTTCTGTTTAGAAATTGGCTGCC
CAACCGCTATATTCAATTTGAATACTCGTGTTCGGTTGTATTTTAGGAGGGAAATGTTAAAAAA
CACATTGGCTAAGTTGATTTTTGGAGTAATGGTATGAACAACCTGAAGTGACTCTTTTGGTGTA
GCAAGATGGTCCCCTAAGAAACTATTTTATCATAAAGAAACTACTCCCCTCGAATTTAACAGTA
CGATTTCATTTTAGTGGACAGATTTTTTTCTTGCTAGAGTACAGATAGTCAGTGGCGCTTTACT
TTGCTCTTTCCACAAGTATACACTACAATCTACAAAGTCCATTCCTTTCCAGCTATGTTGTTGT
GTGTAACTTCTTTGACACAACTCTGTTCTTTTGCAGATAGGGTATTTCGTTCTGACTGTAATAC
CAAAGAAGTATATGAGGAAGGGGCCAAAGCAGTTGCTCTCTCTGTAGTTAGTGGCATTAACTGT
AACTCAACACCTACTTTCTATCTTACTCTATTTTTTTTAAATCAAAGTACTCCATGAAGTCACT
GAAATGTGTTTTCTTTCCCCCTTTATCTGTATGTAACAGCAAGTGTTTTTGCATATGGTCAAAC
AAGTAGTGGAAAAACATACACCATGACTGGAATAACGGAACATACAGCAGCAGATATCTATGAT
TACATTGGCAAGGTTACCAAATAATCGTTCCTAAGGTTTAATTCATAACATGTCTTCAAAATGG
CACCATTTCTGCTTGCAAACTTATACACATGGACATTTTTTCTTGCAGCATGAAGAGAGAGCAT
TTGTATTGAAATTTTCAGCAATTGAAATATATAACGAAGTTGTAAGGGATCTTCTTAGTGCAGA
AAACACATCACTTAGACTTTGGGATGATGCAGAGGTGAGAACAACAAATAGCTATATATTTTAG
AGAAAAGAAAAGGTATCCTACTGTCCCACTGCACTGATTTTGGTCCACTGCTGTTTACTTCTAC
AGAAGGGAACATATATAGAGAACCTTACAGAGGTGATCTTGAGGGATTTGGACCACCTGAAAGA
ACTTATTTCTGTGTGTGAAGGTGGGTACTGTTAGTAGTTTGTTTAATACTTAATCAGTGATTAT
TATCATCTAAGTGTACTTTGTGTTCTTGTATCAGCTCAAAGGAGGACCGGCGAGACATACTTAA
ATGGAAACAGCTCCAGATCACACCAAATACTTAAACTGGTTTGCCTACTGCTTGGTTGCATGTA
GAAAAGAAAAGGGACTGGTAGATTAATGTAAAATAGTCACTGCCTAACTTCATCACTTATGATT
TGATAAATGATTCTTTCAGACTATTGAAAGTTCTGCTCGTGAGTTCTCAGGTAAGGACAAGTCA
ACAACACTTGTTGCTAGTGTGGTGAGAAATTATAATTTACTCATATTTCTTTCGTGGCAAAAAA
AATGGGTAAGTATAAGCGCATTCGATTGTACCATGCAGAACTTCGTTGATTTGGCTGGAAGTGA
ACGTGCATCTCAGGCATTGTCAGTTGGGGCTAGGCTGAAGGAAGGTTGTCATATTAATAGAAGT
CTACTTACCCTAGGAACTGTGATCCGGAAACTAAGGTTGCAACCTTAACTCACTGTTTTGAGTT
CCAGTTTAGCATGCTCCTCTTACGATAAAAATATCTTTTGTTCATTTAACTGTTTACCTGTTCT
CATTTGTGCAGCAAGGTAAGAAATGGGCACATACCATACCGAGATTCAAAGCTCACACGCATAT
TACAGATTTCTCTAGGAGGCAATGCAAGAACAGCAATTATTTGTACAATGAGCCCAGCCCGAAG
CCATATGGAACAGTCAAGGAATACCTTGTTGTTTGCAAGTTGTGCAAAGGAAGTGGTGACAAAT
GCCCAGGTTAATGTGGTTATGTCTGATAAAGCATTAATTAAGCAATTACAAAAAGAACTTGCAA
GGTTGGAAAGTGAATTGCGATGCCCAGCTTCATATCCTGGTCTTGAAGCATTAGTGAAGGAAAA
AGATAATCAAATCCTGGAG
						
					

			
		

Sequences
Splice junction sequence	ACAAAAAGAACTTGCAAGGTTGGAAAGTGAATTGCGATGCCCAGCTTCATATCCTGGTCTTGAA GCATTAGTGAAGGAAAAAGATAATCAAATCCTGGAGatggcgtagagggggcagggaacagcgt agaggagggggagtaagaaaggagaggacacacacatacacagagagcgagagagcgagcgaga gagagaga
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	ATGGCGTAGAGGGGGCAGGGAACAGCGTAGAGGAGGGGGAGTAAGAAAGGAGAGGACACACACA TACACAGAGAGCGAGAGAGCGAGCGAGAGAGAGAGATAGATGGGGGCGATTGGAGGTGACGAGC AGGTGCAGTTGGACAATGTGGATGGGGCCGAGGTGGCCAATGACGGCGGTGCAGGTGCTGCGGG AAGGCTGGAGAAGATACTGGTCTCTGTGAGGCTGAGACCGCTCAGCGACAAGGAGATTGCAAGG AGGGACCCGGCGGAGTGGGAGTGCATCAACGACACTACCATCATCTCCCGGAGCACCTTCCCGG ACCGGCCTACTGCTCCGACTACGTATTCATTTGGTTAGCCCTTTGCAAATCAGGCTTCTTTTAT TCATTTGGTCTTCTGGACGCAGCATTTCATCATCTCTGAAGGTTCTGTTTAGAAATTGGCTGCC CAACCGCTATATTCAATTTGAATACTCGTGTTCGGTTGTATTTTAGGAGGGAAATGTTAAAAAA CACATTGGCTAAGTTGATTTTTGGAGTAATGGTATGAACAACCTGAAGTGACTCTTTTGGTGTA GCAAGATGGTCCCCTAAGAAACTATTTTATCATAAAGAAACTACTCCCCTCGAATTTAACAGTA CGATTTCATTTTAGTGGACAGATTTTTTTCTTGCTAGAGTACAGATAGTCAGTGGCGCTTTACT TTGCTCTTTCCACAAGTATACACTACAATCTACAAAGTCCATTCCTTTCCAGCTATGTTGTTGT GTGTAACTTCTTTGACACAACTCTGTTCTTTTGCAGATAGGGTATTTCGTTCTGACTGTAATAC CAAAGAAGTATATGAGGAAGGGGCCAAAGCAGTTGCTCTCTCTGTAGTTAGTGGCATTAACTGT AACTCAACACCTACTTTCTATCTTACTCTATTTTTTTTAAATCAAAGTACTCCATGAAGTCACT GAAATGTGTTTTCTTTCCCCCTTTATCTGTATGTAACAGCAAGTGTTTTTGCATATGGTCAAAC AAGTAGTGGAAAAACATACACCATGACTGGAATAACGGAACATACAGCAGCAGATATCTATGAT TACATTGGCAAGGTTACCAAATAATCGTTCCTAAGGTTTAATTCATAACATGTCTTCAAAATGG CACCATTTCTGCTTGCAAACTTATACACATGGACATTTTTTCTTGCAGCATGAAGAGAGAGCAT TTGTATTGAAATTTTCAGCAATTGAAATATATAACGAAGTTGTAAGGGATCTTCTTAGTGCAGA AAACACATCACTTAGACTTTGGGATGATGCAGAGGTGAGAACAACAAATAGCTATATATTTTAG AGAAAAGAAAAGGTATCCTACTGTCCCACTGCACTGATTTTGGTCCACTGCTGTTTACTTCTAC AGAAGGGAACATATATAGAGAACCTTACAGAGGTGATCTTGAGGGATTTGGACCACCTGAAAGA ACTTATTTCTGTGTGTGAAGGTGGGTACTGTTAGTAGTTTGTTTAATACTTAATCAGTGATTAT TATCATCTAAGTGTACTTTGTGTTCTTGTATCAGCTCAAAGGAGGACCGGCGAGACATACTTAA ATGGAAACAGCTCCAGATCACACCAAATACTTAAACTGGTTTGCCTACTGCTTGGTTGCATGTA GAAAAGAAAAGGGACTGGTAGATTAATGTAAAATAGTCACTGCCTAACTTCATCACTTATGATT TGATAAATGATTCTTTCAGACTATTGAAAGTTCTGCTCGTGAGTTCTCAGGTAAGGACAAGTCA ACAACACTTGTTGCTAGTGTGGTGAGAAATTATAATTTACTCATATTTCTTTCGTGGCAAAAAA AATGGGTAAGTATAAGCGCATTCGATTGTACCATGCAGAACTTCGTTGATTTGGCTGGAAGTGA ACGTGCATCTCAGGCATTGTCAGTTGGGGCTAGGCTGAAGGAAGGTTGTCATATTAATAGAAGT CTACTTACCCTAGGAACTGTGATCCGGAAACTAAGGTTGCAACCTTAACTCACTGTTTTGAGTT CCAGTTTAGCATGCTCCTCTTACGATAAAAATATCTTTTGTTCATTTAACTGTTTACCTGTTCT CATTTGTGCAGCAAGGTAAGAAATGGGCACATACCATACCGAGATTCAAAGCTCACACGCATAT TACAGATTTCTCTAGGAGGCAATGCAAGAACAGCAATTATTTGTACAATGAGCCCAGCCCGAAG CCATATGGAACAGTCAAGGAATACCTTGTTGTTTGCAAGTTGTGCAAAGGAAGTGGTGACAAAT GCCCAGGTTAATGTGGTTATGTCTGATAAAGCATTAATTAAGCAATTACAAAAAGAACTTGCAA GGTTGGAAAGTGAATTGCGATGCCCAGCTTCATATCCTGGTCTTGAAGCATTAGTGAAGGAAAA AGATAATCAAATCCTGGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.187486285

Conservation Information
Conserved circRNAs	NA
PMCS	0.187486285

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							23521947-23521848(+)
23522733-23524263(-)
23521909-23524283(-)
						
						Potential amino acid sequence
						
							MGAIGGDEQVQLDNVDGAEVANDGGAGAAGRLEKILVSVRLRPLSDKEIARRDPAEWECINDTT
IISRSTFPDRPTAPTTYSFDRVFRSDCNTKEVYEEGAKAVALSVVSGINSSVFAYGQTSSGKTY
TMTGITEHTAADIYDYIGKHEERAFVLKFSAIEIYNEVVRDLLSAENTSLRLWDDAEKGTYIEN
LTEVILRDLDHLKELISVCEAQRRTGETYLNGNSSRSHQILKLTIESSAREFSGKDKSTTLVAS
VNFVDLAGSERASQALSVGARLKEGCHINRSLLTLGTVIRKLSKVRNGHIPYRDSKLTRILQIS
LGGNARTAIICTMSPARSHMEQSRNTLLFASCAKEVVTNAQVNVVMSDKALIKQLQKELARLES
ELRCPASYPGLEALVKEKDNQILEMA*(+)
MPLTTERATALAPSSYTSLVLQSERNTLSNEYVVGAVGRSGKVLREMMVVSLMHSHSAGSLLAI
SLSLSGLSLTETSIFSSLPAAPAPPSLATSAPSTLSNCTCSSPPIAPIYLSLSLALSLSVYVCV
LSFLTPPPLRCSLPPLRHLQDLIIFFLH*(-)
MCVSSPFLLPLLYAVPCPLYAISRI*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	23521947-23521848(+) 23522733-23524263(-) 23521909-23524283(-)
Potential amino acid sequence	MGAIGGDEQVQLDNVDGAEVANDGGAGAAGRLEKILVSVRLRPLSDKEIARRDPAEWECINDTT IISRSTFPDRPTAPTTYSFDRVFRSDCNTKEVYEEGAKAVALSVVSGINSSVFAYGQTSSGKTY TMTGITEHTAADIYDYIGKHEERAFVLKFSAIEIYNEVVRDLLSAENTSLRLWDDAEKGTYIEN LTEVILRDLDHLKELISVCEAQRRTGETYLNGNSSRSHQILKLTIESSAREFSGKDKSTTLVAS VNFVDLAGSERASQALSVGARLKEGCHINRSLLTLGTVIRKLSKVRNGHIPYRDSKLTRILQIS LGGNARTAIICTMSPARSHMEQSRNTLLFASCAKEVVTNAQVNVVMSDKALIKQLQKELARLES ELRCPASYPGLEALVKEKDNQILEMA(+) MPLTTERATALAPSSYTSLVLQSERNTLSNEYVVGAVGRSGKVLREMMVVSLMHSHSAGSLLAI SLSLSGLSLTETSIFSSLPAAPAPPSLATSAPSTLSNCTCSSPPIAPIYLSLSLALSLSVYVCV LSFLTPPPLRCSLPPLRHLQDLIIFFLH(-) MCVSSPFLLPLLYAVPCPLYAISRI*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Han et al., 2020

circRNA

Detail information of Zm00001d002817_circ_g.1

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