Detail information of BGIOSGA016952_circ_g.1


General Information
CircRNA Name BGIOSGA016952_circ_g.1
ID in PlantcircBase osi_circ_014688
Alias Chr04:29418087_29422252(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 27645144-27649309  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA016952
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA016952-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTTAGGACTGGAATTTATTGTAAGAGAGATTATTGACCAATACAACACCTTAAGAAAACAGTT
GAACAATGCGATCCCTTCAGTTTCTATTTCGAACAGggatgaccggacaaaagcttataagagg
atggttgatgtgagtaggagaattgatgattaccatcagcatccgcagttcggtgtttttgcaa
gttcagtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGATGACCGGACAAAAGCTTATAAGAGGATGGTTGATGTGAGTAGGAGAATTGATGATTACCAT
CAGCATCCGCAGTTCGGTGTTTTTGCAAGTTCAGTTGTCACAAGTCGTGTTATGGAGTGCTTGA
AATCATCCAAGGCAAAATAGCTAATATCTTGTTCTAATTCTAATGCAATACCTATGTAGCATAG
TGCACTTTGTCCTGTTTTTTTTTCTACTTATGTCATATTGGCATCAATTCATTGGAGTAGTACT
CTTGAATGCAATCAATTCTTTTTTTTCCTAAACTTTTCTAAATCCATGAAATTTACCCATAATT
TATCTTACTGTTTCTGGTAAATCATAGTATGGAAACTTCAAGTTTGGTCGGATAACTTATGATC
TATTTAATTATATCTTGTCTGTTGTGTTTATACACATGCTGACATGGATATGTGCATCAAAATT
GTGGTATCTTGACAAACCCATTGCAGTGGAAATTACAATGTACCCTGTTATTTTCTTCATTTAT
CTCCATCTCATTGTTACATATTTGGTTCACATGTATAAAATTAGCTATTTTCCACTCTATATAG
ATGACTTTAATAATTTGTCACTTAACATATGTAAATTAATTATTTGCCATATAATAGCCGAGTG
CTCTTGATAAAATGCCATTTTGTCCATTTTTTTCAACTTTACCCCCTGATCATCATGCCCACCT
TAATTCATACATATTTTGTCCTTCACCCTTCAATCTACCAGAGATCAACATCTTTGCCGATTAT
TCCTTCTGCACCACAAGGATGCCATGAGGTTCCCTTCCTTCTGTAGACAGATATGGTGCAAGGT
GGAACTTTCCACATGATAGGGAAGGCACCGTGAGGTAGGGAATGGTGTGCCTTCCTTCGTGCAA
GAGGGAAAAGAGGGATGTCAGAGCCAGCATAGATGATTGCAGCGGACCAGGGTGATTGGAGCAG
GCTCCTCCCCTTGTTTGGTGCCGGTTGGTTGTGCCTGCTATAGCTTTCCCTGCCAGCATCAAGC
CATCAACTGTGATGGGGGTGCGCAAGGGAGGGATGCACATTTGGGATAAGCAAAGATGTTGATC
TCTTGTGGCTAGAAGGGTGAGGGGCAAAATAGGTATGAATTAAGGTGGGCCTGGTGATTAGGGG
GTAAAGTGTGAAAAATTCCTGTATCTATGATATACCGAATGTAATGTCGTTTAAATCATTGGCA
CTTAACCAGATTGAGAATAATGATGGGAGGTAGCAGTGTGGAATTTTCTGCAATCATTGATAGT
GTTGTTTAATTGTCCATTTGATTGATCTTCTGCAAAGTTATTAAGCATAACCTAGAAAAAGTAT
TTGCTATTTTCCTAGTTTTACCAGTATATAATTCAATTAATTTGAAAGGAGCATACAGATCTTT
GAAACAAGAAGGATCCATATACAAGTCAAAGTAAAATCACTGAGTTTTTTTTTTGTCTACACCT
AGCTATGTATTTTCTCTCTTACTTCACCAAATATATTTCTTTTTTTATTTGGTCTACAACTTTA
TCAGGACCTGGGTAATTTAAGGTGACAATTGCGCTTACAGCTTATGTTGCATGGTTTCTCTGTG
AGAAATACATAACACGATTTCACTTTATTTTCTAACATCTTATGCATTTTGCAGTTATACTCAA
AAAAATCAGATGATGAATCTTCTGCATCTACAGATACATATGGAATCAAATGGTTAAAAGATAT
CATCCTCAGCAAAAGATCCGACAATGCATTTAGGAGTATAATGGTCGGGGACCCAAAAATTAAT
TTAAATGAAATCGGTATTCCTATGGGTTTAGCTTTGAACTTGGTTGTTTCTGAGCAAGTTAGTT
CTTACAATTTCGAAACCATAAATTTGAAGTGCAACTTGCACCTTCTTACCAAGGAAGTACTGCT
TGTCCGCCGAAATGGGAATCTTATTTTTGTTCGGAAGGCAAACCAGTTAGAAATTGGTGATATT
GCTTATAGACTATTGCAGGATGGTGATCTTGTTTTGGTAAATAGGCCACCTTCAGTTCATCAAC
ATTCTCTGATTGCCCTATCTGCAAAACTTCTGTCAACTCAGTCAGCTGTGTCAATTAATCCACT
ATGTTGTGATCCTTTCAAGGGAGACTTTGATGGGGACTGTTTGCATGGATATATTCCTCAATGT
CTGCAATCAAGAATTGAGCTTGAAGAACTAGTTAGTTTAAGTGGCCAACTCTTGAATCAACAAG
ATGGGCGAAGTTTGGTGTCATTAACACATGACTCTCTAGCTGCTGCACATCAGTTAACAAATGC
AGATGTTTTCTTGGAGAAAGCTGAATTTCAACAGCTTCAGATGTTATCCTCTTCCATCTCATTG
ACACCAATGCCATCAGTTTTTAAATCTACAAACTCTCAAGGTCCTCTTTGGACTGGTAAGCAAC
TGTTTGGAATGCTGCTACCTTATGGTATGAATATCAGTTTTGATCAGAAGTTACACATAAAAGA
CAGTGAAGTGCTTACCTGCTCATCAGGATCTTTTTGGTTACAGAATAACACATCCAGCCTTTTC
TCTGTCATGTTCAAAGAGTATGGTTGTAAGGCTCTTGAGTTCCTTTCTTCCACCCAGGATGTAC
TATGTGAATTCTTAACCATGTGGGGTTTAAGTGTCTCCCTTTCAGATCTCTATCTGTTCTCAGA
CCATTACTCAAGGAGAAAACTGAGTGAGGAAGTTCATCTGGCATTGGATGAAGCGGAAGAGGCT
TTTCAAATCAAGCAAATATTGCTAAATTCAGTATCTATACCAAATCTGAAGTATTATGATGGAG
GTGATGATAGATCAAACACTGATGAACAATCTGGTTTTACTCAAGTCAGTCTGCCAATCATCAG
ATCTTCAATGACATCATTTAAGAGTGTCTTCAATGATCTGTTGAAGATGGTGCAGCAGTATGTG
AGTAAAGATAATTCAATGATGACAATGATTAACTCTGGAAGTAAAGGTAGTGTTCTGAAGTTTG
TTCAACAGACTGCATGTGTTGGTCTTCAACTACCAGCAAGTAAATTTCCCTTTAGAATTCCCTC
ACAACTATCATGTGTTTCCTGGAATAGACATAAATCTCTCAATTGTGAAATCACTGACGGCACC
AGTGAATGTGTGGGAGGCCAAGACATGTATGCTGTTATTAGAAATTCTTTTCTTGATGGACTAA
ATCCGTTAGAATGTCTACTGCATGCCATATCTGGCAGGGCAAATTTCTTTAGCGAAAATGCTGA
CGTTCCTGGGACTTTGACAAGGAAACTAATGTATCACTTGAGAGATACATACGTTGCTTATGAT
GGGACTGTTAGAAGTTCTTATGGGCAGCAAATAGTGCGGTTTTCTTATGATACTGCTGATGGCA
TGTACAGTGATCATGATCTTGAAGGTGAACCTGGGGCCCCTGTTGGCTCTTGGGCTGCTTGTTC
CATTTCAGAAGCTGCCTATGGAGCTTTGGATCACCCAGTTAACAGTTTAGAGGATTCCCCTCTT
ATGAACTTGCAGGTTATATTCTTCTGGTTTGCTCTTTAATGGTCTTTCGTTGTCATTTTTATTC
ATCTTTCCTTTTGACAATATTTGAACTTTGGCACTTTGCTGTGCAGGAAGTTTTGAAGTGCCAC
AAGGGCACAAATTCTCTGGATCATACTGGTTTGCTTTTCCTGTCAAAGCATCTAAGGAAATATA
GATATGGTTTTGAGTATGCATCACTAGAAGTTAAGGATCATCTAGAACGAGTGGACTTTTCTGA
TATGGTTGACACGGTCATTATTTTGTTAGTATATTTAATCTGTGGCTTTCTTCACCTTTTAATA
TTGTTCATTTTAGTAAAAATTTCATGTCTTCTTTCATTTTTCATATTTAGATATGGCGGCTCAG
ATATGCAGAAAACAAAAGGAAATCCTTGGATCACTCATTTTCATTTAAGCCAGGTCTTGTTCTT
TTGAAGTAAAATGGTCATGATTTCATAGGGACATTGGGTTGGTATCTAAATGTCTGTTCAAATT
TGTATATATGTGTAGGAAACAATGAAGATAAAAAGGTTAGGACTGGAATTTATTGTAAGAGAGA
TTATTGACCAATACAACACCTTAAGAAAACAGTTGAACAATGCGATCCCTTCAGTTTCTATTTC
GAACAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021