Detail information of Solyc12g055720.1_circ_igg.1


General Information
CircRNA Name Solyc12g055720.1_circ_igg.1
ID in PlantcircBase sly_circ_003641
Alias SL3.0ch12:62635933|62640759
Organism Solanum lycopersicum
Position chr12: 61685119-61689945  JBrowse»
Reference genome SL2.50.38
Type   igg-circRNA
Identification method CIRI; find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACTTAAGGCGATCAATAGGTGGAGGTCTTAGAGTTACAGCAGTGGGAGTTTCAAATGTGCCCA
CGCTTACTGTGGAGGAGATTTGATAAGGTTTCAACTcatcggaattaaggttgattgtcttgac
tatctgtttcaccccttgaactccgatcaatactatatgtcctcttgctcatatttgctcgttg
aactagcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATCGGAATTAAGGTTGATTGTCTTGACTATCTGTTTCACCCCTTGAACTCCGATCAATACTAT
ATGTCCTCTTGCTCATATTTGCTCGTTGAACTAGCCGAACTAAGGCTTCAACAACTTCTGACAT
AGGTGGCCGGAACTCAGGCTCAGACTGCCACAGTAGCATACATGACAATGAGATTAGTGTTGAC
TGAACTAACAGAATCAGGTTGTTGATAAAAACAGCAGATTTATGAATTTGGCATACTGTCTATA
CAAAATATTACCTGGACACAAAGAGCAATTACATCAGCAAAGCGCGAAATAGATTTAACAGGAT
AGAGTCCTTTAAGTGCTGGATCAACCATCTTAGCCAAGGCATCAATATCATGGAGTTGAGGTGT
TGCCCATCTAACTAAAGATTGTTCAGATCTTGGTCTCTCACTGCATCAAGAGCATAAGATTTTC
TAAATTTCTTCCTGTTCGTCATCTTAAGTAATTTGACACAATATCATGATGCCTGAGTAACTTT
ACCTATCAAAAGGTGTTCGTCCGGTAAGAAGTTCCAACATAACAACTCCAAAGCTGTAGACATC
ACTTTTTATGGTGCATTGCCCATACATAGCTACCTCAGGTGCACCATACCCAGACCCTGTATTA
TGGTTTAGTGCCTGCAAAGATGATCACTTTGAAATATCTTGAGAAGAAGCAACAGCTACAATGT
TACCAATTGAGTAAGCAGAGAAGAGCAGGAGATAAAGCACCAGGGACCATTGAAAATGAAAAAA
TTACTTATATACACACATCAACTTACCTTAATATCTATTTATCCCTACCTTTTTTAAAAATTTC
AAAAATCCCTTAGTTTCTTCAATACATAAAATCTTCCAGATACATAAATATTTCACTCCTATTT
TCAGCCTATATCCACGTTTCTCACTCGCATTTTATTCCTCCATTTTATCCCTAAATTCTCGTCA
CTTCTTTAGCAGTTACAAATTTTGAATTTATTTTGATTTTCAGTAGGTATTAGTTATTATTTAA
TAATAATAATTAACATAATATTTGTAGAAGTTCGCCTTTTCTATTGTCGTTTTTTTTTAATTTC
GTCCTTTTCCTTTTTTGGTTTAATAGTTGTTTTATTTTTCTATTTATCCAAATCACTGTTGGGT
TTGATACTTGTATTTGATTTCTTTATTTTTATTAATAAAACTCACCTCGTATGTTTGATTAAAA
GAAATATATAATACTTGTAATTTTTTCATAATTTGAGTTGGTTATGGATTCTAACAACTAATCA
TTCATTAAAATTGATTAGATTTTTGTATTGCTACTAATCTTCTAATTGTCTCATAATAATATTA
GTTTTAATTTCATCAAAATTTCATACGATTTAATATTTTTCTCTTTATTCTGGTGTTTTTCATA
AACAAATTTCTTTCATGAATTGTGTTTGTGCATGTATCTAATTGATAACTTAATTCTTATTCAT
TGTGATACATTTATAAATACATATTATTTCAGATTAGCTACATCCTTCTTTAACAACCTTATTG
TATCAGATACATTATTATCAACTACAAAATGATACATTATGTAAGCATACATATCTTTCAAGGC
AAACAATATGATACTCATCAATTTAAACGAGATACATAAATAGTAATGTATCATGCACTATTTT
TTTAGATATGATACGTAAATTTGAATTTAAACTAAATGTATCAATACATAGCAACTACCACAGT
ACTATAATGTATCGATCTCTAATCTAACATCTTATGGGCAACAAATACTTATTTAATGTATCTA
GTATAAATACAATACTGATACATAAATAATAATGTATCATGCACTAATTTCTTAGATATGATAC
ATAAATTCGAATTTATACTAAATATACCAATTACATAGCAATTACCACACAGTAATGTATCAAT
CTCAAATCTAACATTGTATGGGCAACATATTTATTTAATGTATCTAATATAAATATAATACTTA
TCAATTTAAACAAGATACATAAATAGTAAAATGTTAAATAATAAAGATATTCATGATGTATCTT
CTCGGATCTTCAATAAACTAGGAGAAGAATTTTGAATCTCAAAATTTTCAAAATTTTTGAATCA
AAATCGAAAGGATATTCGATGAACTTGAACTCTTGAAGATTCACAACAGAAATCGTTTGTCCAA
CAACAATTCCATACAATCCTTCATAACTCACTTCGCTTTCTAAAGTTTCAACAATTTTTTTTAT
GAAACAGAGAGAACAATGAACAAGAAGAAGAAATTTAATTTTTTGATTTTTTTCGTTTGTTACA
CTATAGGATTTTGAATTCTTGACAATTATTTGAATGGAATAACTTATTTTATGGGATATTAATT
TAATTTTCAGCTTTTTTCCCCTTACTTAGTGCAACAAATGGTACTATAAGATTTTAAATTGATT
TTACAGCTTTTTTTTCCTTAATAAATGCAATAGACTAATGCATAATGTATCAACAATAATGTAT
CCCGGATCCTTAATTACGTATCTGAAATGCCTAAAAAATATGAGATTTACGTAATTATAAAAAT
AATAGGGATAGAAGGTAATTAACATTTTACACTATGATATTTATGTAAGTTATAGAATATACTT
TTATGAGTTAATGGTAAAGTGTTACTTTTATAGAATATACTTTGGATAATGCCTTGCCCTAGAT
TAGAATAAAATTCTTGTTTTTTACATGACAACTTCTCATGGAATCCAATTTATAAACCCCAGAA
ACAGTTCTAAAAAATTTCATGTTTCAAAGGTTAGAGCACAAAACAAAGCTTCTCCTGAAACAAA
TAACATTTCAACCATGTGATCTGTTGATATTTCTTATCTCCTTGAGAAGGACATTCACGCAGCC
AATAGTATGTCAAAACATGCCTATATATACATGTGTACTTATGTGCATGCTTATACATCAAATC
CACCGTAACACTTGGCAACAATGCATAAAGTAGGGAGCTCAAAGTCACCTGATCTGCATCATTA
ATAAGGCTTGCTAATCCAGAGTCTGATAGATGAGGATTGAGTTCCAGATCAAGTAAAATATTTG
CCGATTTAATGTTCTTATGAACCATTGATGGTGAATGAACTTCATGCAGATACCTGCAAAGATG
CTTATATTAGCTAGTGAAGAAATTTGCTTATGGATATCATGAAATGAAGAGATGTGGAAACCAC
AATAAATTGGAAATTTTTTACTCCTTTTTTTCCTTTTATGTGGCAGTATTTCCTTTTAAGCCTT
TTTCAAGAAGATTGACGCCTTTCTATATTCGGTAACAATTTTAACTTCAAATTTTCAGTGTTAC
CCCCAAGGATATGCTTTTATAGCCACACAAATGACATGGTTAAGACCATAAGTTCAAGAAGTCT
TTCTTTCTTTTTGAACTCCATCCCCACTCAAACACCACCACATAATATGAAACCATGGAAGAAC
TGATGTTTTGATTATCTTTTTATTGGCAAGACCGGCATATATAGGATACTGAGCTCCAAGTAAA
AAGAATAAATGAACTCTTCTTTATGTTAACTTACTGGTCTTCAATGTTTAAATAAGACTAATTT
CTATAGTGGTCTGTTTAGTCCAACAAATATGATCTTTAAATGCAATATTACAATGGATCCTCTG
GTAAAGTTCATCACGAGTCACAACTAAGTGCTTGGTGTTGACTTACACAGATTTCCCTTTTCTT
CTACCCACAAGATCTATTCTATGAATCTCCGGTATAAATAAACAGACGATTCATGTAAACTACT
AGTAACTAGCCATCAAAAAATAAGGAGAAAAACATAGCATTGCTGCATGCTCCATGAATTTTAC
TTCCCCCTTCCAATTTATGTGACATAGTTCCAATCGGCATTGAATTTAAGAAAGACATGAAATT
TTTTGAAATTTGTGATCTTAAACATGGCATAGCATTTGTCTGACTGTAAAACTTTTGAAACTTG
TGGCCTTAAACTTACCATAACATCTGTGTGGCTATAAAGCTTCTCACAAATGGTAAAATGGGAA
ATATAAAGTGAGTTGTTTCCAAATACAGAAACATGTAACTGTAACCAATTGAATAAAATAATTC
TGTGATTGCAAAACTCACTCTAGTGCTCGTGCTGCACCAAGTGCAATCTTGACTCGGCTATTCC
ATGCCAGTGGCTTGCTGTCTTCATCTGATAGATGCAGGAAATCATGCAGAGAACCATTTTTATG
GAATTCATGAACTAGCAAGTACTGTCCATGCTCTGAACAATAACCGACAAGCTCAATTATATTT
GGATGATGCAACTGTGATATCTCAGAAACTATATTGAGAAAATCTTCATGATTTTGGAGGGCAG
ACGAATTGATTTTCTTGACAGCAAGAACCTACCACATTTCAAATAATAGAAAGGAGCACAATAA
GTATGTAGTTTCTATGATTATACATTTTTGCTGAAACATGTGTTAGCATCTCTAAATCACCTTA
TATAGTCATAAGAAAGAAAACAAGTTTTTTTTAATGGGTACTCATAGAGAGAAGTATTACTTTG
CCATCATCAAACTGAGCGCAATAAACACGCCCAATTGATCCCTCGCCAATAAGGTTTTCAACAT
TGAAGCTATCAGTAGCAATTTGTAGGTCTGCAATTGAGAACTGTGTAGCGCTGATTTGAGCTGT
ATTAATTTTCTTGGGAGGAACAATAGGTTTCGGTGAAATGTCAACCTCATCAAAGGACTTAAGG
CGATCAATAGGTGGAGGTCTTAGAGTTACAGCAGTGGGAGTTTCAAATGTGCCCACGCTTACTG
TGGAGGAGATTTGATAAGGTTTCAACT
Conservation Information
Conserved circRNAs NA
PMCS 0.137291012
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to low-temperature stress (acting as miRNA sponges)
Other Information
References Yang et al., 2020