Detail information of Zm00001d039366_circ_g.1


General Information
CircRNA Name Zm00001d039366_circ_g.1
ID in PlantcircBase zma_circ_007466
Alias Zm03circ00003
Organism Zea mays
Position chr3: 2656972-2657429  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method CIRI2
Parent gene Zm00001d039366
Parent gene annotation Protein trichome birefringence-like 39
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf, endosperm
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d039366_T001:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGCCAAGGCGCTGCACACCTGGGCCAGGTGGGTCGACGCCAACCTTGTCCAGACCGACACCAA
GGTCTTCTTCCAGGGGATCTCGCCTTCCCACTACAGgactacaacgtgaccgtcgtgtactacc
tgacgcactacctggtggacctcgtgacggagccgcacaccggccggcgcgtcctcaagctgga
cgccatcg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 341
Transcript exons: 2656972-2657153,2657271-2657429
GACTACAACGTGACCGTCGTGTACTACCTGACGCACTACCTGGTGGACCTCGTGACGGAGCCGC
ACACCGGCCGGCGCGTCCTCAAGCTGGACGCCATCGACCAGGCCCGCGACTGGCTCGCCGCCGA
CGTGCTCGTCTTCGACTCCTGGCACTGGTGGCCGCGCACCGGCGCCACGCAGCCCTGGGACTAC
ATCCAGGTGGGCGACACGGTGGTGAAGGACATGGACCGCACGCAGGCCTTCGCCAAGGCGCTGC
ACACCTGGGCCAGGTGGGTCGACGCCAACCTTGTCCAGACCGACACCAAGGTCTTCTTCCAGGG
GATCTCGCCTTCCCACTACAG

Transcript length: 458
Transcript exons: 2656972-2657429
GACTACAACGTGACCGTCGTGTACTACCTGACGCACTACCTGGTGGACCTCGTGACGGAGCCGC
ACACCGGCCGGCGCGTCCTCAAGCTGGACGCCATCGACCAGGCCCGCGACTGGCTCGCCGCCGA
CGTGCTCGTCTTCGACTCCTGGCACTGGTGGCCGCGCACCGGCGCCACGCAGCCCTGGGACTAC
ATCCAGGTGGGCGACACGGTGGTGAAGGACATGGACCGCACGCAGGCCTTCGCCAAGGCGCTGC
ACACCTGGGCCAGGTGGGTCGACGCCAACCTTGTCCAGACCGACACCAAGGTCTTCTTCCAGGG
GATCTCGCCTTCCCACTACAG

Genomic sequence GACTACAACGTGACCGTCGTGTACTACCTGACGCACTACCTGGTGGACCTCGTGACGGAGCCGC
ACACCGGCCGGCGCGTCCTCAAGCTGGACGCCATCGACCAGGCCCGCGACTGGCTCGCCGCCGA
CGTGCTCGTCTTCGACTCCTGGCACTGGTGGCCGCGCACCGGCGCCACGCAGCCGTGAGTGACA
TCACTGTTATTTCCTTCCTTCCTTCTCTGTCTATGGTAGGCTGCTGGCGTCAGTCTGAAACTGG
GTCCGAGGCTGAAACTGGGTTTGTTCATGGCCTGTGCTTGCAGCTGGGACTACATCCAGGTGGG
CGACACGGTGGTGAAGGACATGGACCGCACGCAGGCCTTCGCCAAGGCGCTGCACACCTGGGCC
AGGTGGGTCGACGCCAACCTTGTCCAGACCGACACCAAGGTCTTCTTCCAGGGGATCTCGCCTT
CCCACTACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.246096659
Functional Information
Coding potential Y
Potential coding position 2657312-2656981(+)
Potential amino acid sequence MDRTQAFAKALHTWARWVDANLVQTDTKVFFQGISPSHYRTTT*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Han et al., 2020