Detail information of AT1G50430_circ_g.10


General Information
CircRNA Name AT1G50430_circ_g.10
ID in PlantcircBase ath_circ_006676
Alias 1:18685068-18685539
Organism Arabidpsis thaliana
Position chr1: 18685068-18685539  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G50430
Parent gene annotation 7-dehydrocholesterol reductase
Parent gene strand -
Alternative splicing AT1G50430_circ_g.9
Support reads 1/1
Tissues seedling;leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT1G50430.1:2
AT1G50430.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACTTGCGAATCAGAAATTGATGAGCTTACAGGAGAATGACGAAAGGTGGACAGAAGGCGAGAA
GCGATAACATCGATGCGTAAGTAACGATCGGAGAATcaatcaaagtgggtcttggccatatgtt
gataagtccttgaactccattctcccaaaagaagccaaaggtctgagtaacagaaccatcctga
tgaaccat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAATCAAAGTGGGTCTTGGCCATATGTTGATAAGTCCTTGAACTCCATTCTCCCAAAAGAAGCC
AAAGGTCTGAGTAACAGAACCATCCTGATGAACCATTGTGTACCATCTGCATCATAAAGAAATG
AAACTTGTGAGCATTACTTAAAACTCACTAAATATGATTTTGTAGCTTTAAATCTACCCTTGTT
TCCTAAAAATCTGGAAACTCACATTGGCCAGAGAAAGAATCATTGAATCGCTTTTTCAATTAAA
GACTCTTATCAAGTCCTACTTAATGGGAAAGGATTTAAAGATATCGGCTATGCACTTCTCGCTA
TGAATTAAGGAGCCAGAAAAGTGTGCGAGTCTGATCTGAGAACTAGAATAAAGACTTGCGAATC
AGAAATTGATGAGCTTACAGGAGAATGACGAAAGGTGGACAGAAGGCGAGAAGCGATAACATCG
ATGCGTAAGTAACGATCGGAGAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.184575732
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020