Detail information of BGIOSGA017008_circ_g.1


General Information
CircRNA Name BGIOSGA017008_circ_g.1
ID in PlantcircBase osi_circ_014714
Alias Chr04:30511609_30512369(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 28533213-28533973  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA017008
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered BGIOSGA017008-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTTCTCCATCAAAATCTAGGGGTTGGAGCCTGGGCTGGTTTAGCAGCAACACTGGCAATAAT
GGCTTGCAATATTCCACTGACCAGAATGCAGAAAAGggacagcagacagaaatcaaaaggccat
gcccatatggaaaagcaaatcttctacaacttgtcacattctcctggatgaaccctgtgtttgc
tattggat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGACAGCAGACAGAAATCAAAAGGCCATGCCCATATGGAAAAGCAAATCTTCTACAACTTGTCA
CATTCTCCTGGATGAACCCTGTGTTTGCTATTGGATACAAGAAACCTCTAGATAAGAATGATGT
GCCAGATGTCTATGGGAAGGACTCCGCTGAGTTCCTTTCTGATTCATTCAAAAAAATCATAGAT
GATGTTGAGAACAGGCATGGTCTAAATACTAAATCAATTTACACAGCAATGTTCCTATTTATTA
GAAGAAAAGCTATAATGAATGCAGGATTTGCAGTCTTAAGTGCAAGTGCATCCTATGTTGGACC
ATCCCTGATCAATGACTTGGTGAAGTACCTAGGGGGAGAGAGGCAGTATGGACTCAAAAGAGGT
TACCTTCTGGCTGTTGCTTTTCTCAGTGCCAAAGTTGTGGAAACAGTTGCTCAGAGACAATGGA
TTTTCGGGGCTCGACAGCTCGGGATGCGGCTGCGGGCGGCTTTGATATCACATATCTATCAAAA
GGGACTCCGCCTATCCTGCAGTTCAAGGCAGAAACACACAAGTGGAGAGATCATTAACTACATG
AGTGTAGATGTACAAAGGATAACTGATGTTATATGGTACACCAACTATATTTGGATGTTACCCA
TACAGCTTTCTCTTGCTGTCTATGTTCTCCATCAAAATCTAGGGGTTGGAGCCTGGGCTGGTTT
AGCAGCAACACTGGCAATAATGGCTTGCAATATTCCACTGACCAGAATGCAGAAAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021