Detail information of POPTR_0003s07480_circ_g.1


General Information
CircRNA Name POPTR_0003s07480_circ_g.1
ID in PlantcircBase pop_circ_000981
Alias Chr03:10552301|10552826
Organism Populus trichocarpa
Position chr3: 9033167-9033692  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   e-circRNA
Identification method find_circ
Parent gene POPTR_0003s07480
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues stem cambium
Exon boundary   No-No
Splicing signals   AA-AT
Number of exons covered POPTR_0003s07480.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTAATCATTTGAAAAGTTTGCTTGTTCATTCTGCTTTACAGTTCCCTGATTATACTGCTGACT
GAAGCTCCCACCAGGTACAAAATTTTGCAACCCAACtacagagattgagcctcctacacgatcc
tttacatgaaataaacacacattatcagcccacaagcaatacaagaattcaacaaaattaaaga
aaaagaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TACAGAGATTGAGCCTCCTACACGATCCTTTACATGAAATAAACACACATTATCAGCCCACAAG
CAATACAAGAATTCAACAAAATTAAAGAAAAAGAAATGAATTTCTTTTAATTTGTGAGAAAACT
GACACAAATTACTAAGACTTTTGCTACCAGATTGATTGGTTAACACTCATAATATGATGCAAAA
AATAAGGAAAAGAGCTACAAAAGAGATTATTTCAGAGCCTCACCTGGTTGCCAAAGTATGTGTT
CCTGAGAGAACTGCCATCTTTCATTACTATGAGCTTCCCACCAAATCCAAAAGTAACCAATGCA
TGTGGAGGACGGCCAGCAGAGGATCTCCCTGTGTTGGGAGCATAAGAAAACTGCTGGTTACTCT
GAAATGATTGATGGGTGACACTTACTTGTTCCTGACTGCAACTGTAATCATTTGAAAAGTTTGC
TTGTTCATTCTGCTTTACAGTTCCCTGATTATACTGCTGACTGAAGCTCCCACCAGGTACAAAA
TTTTGCAACCCAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.166672338
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zheng et al., 2020