Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA008766_circ_g.1 |
ID in PlantcircBase | osi_circ_004156 |
Alias | 2:28691055|28695942 |
Organism | Oryza sativa ssp. indica |
Position | chr2: 28691055-28695942 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA008766 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | BGIOSGA008766-TA:10 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
28691086-28695939(+) |
Potential amino acid sequence |
MSFRDYLLSSTVSDTLEVWELKDLGHQTAQRILHASDPLQSMQEINQNFPSIVSSLSRMKLDDS IKDEIIANQRMVPPGKSLMALNGALINIEDLDLYLLMDMVHEELSLADQFVKLKIPGSAVHKIL SAAPPTESNSFRVDFRSSHVHYLNNLEEDALYKRWRSNINELLMPVFPGQMRYIRKNLFHAVYV FDPASTIDMVLSLYQDSVPIRFGIILYSSRLISVIEENDGNLPVNNGSKTEEDISILIIRLFLY IKETYSTQLAYQFLSNIHKSQNSGDDYNEESVEAHHVEGAFVDSLLSSAKSHPQDVLLKLQKEN MHKQEAEESSRFVHKLGLYKLQCCLLMNGLVHESSEERKPALNAEIMSFRDYLLSSTVSDTLEV WELKDLGHQTAQRILHASDPLQSMQEINQNFPSIVSSLSRMKLDDSIKDEIIANQRMVPPGKSL MALNGALINIEDLDLYLLMDMVHEELSLADQFVKLKIPGSAVHKILSAAPPTESNSFRVDFRSS HVHYLNNLEEDALYKRWRSNINELLMPVFPGQMRYIRKNLFHAVYVFDPASTIDMVLSLYQDSV PIRFGIILYSSRLISVIEENDGNLPVNNGSKTEEDISILIIRLFLYIKETYSTQLAYQFLSNIH KSQNSGDDYNEESVEAHHVEGAFVDSLLSSAKSHPQDVLLKLQKENMHKQEAEESSRFVHKLGL YKLQCCLLMNGLVHESSEERKPALNAEIMSFRDYLLSSTVSDTLEVWELKDLGHQTAQRILHAS DPLQSMQEINQNFPSIVSSLSRMKLDDSIKDEIIANQRMVPPGKSLMALNGALINIEDLDLYLL MDMVHEELSLADQFVKLKIPGSAVHKILSAAPPTESNSFRVDFRSSHVHYLNNLEEDALYKRWR SNINELLMPVFPGQMRYIRKNLFHAVYVFDPASTIDMVLSLYQDSVPIRFGIILYSSRLISVIE ENDGNLPVNNGSKTEEDISILIIRLFLYIKETYSTQLAYQFLSNIHKSQNSGDDYNEESVEAHH VEGAFVDSLLSSAKSHPQDVLLKLQKENMHKQEAEESSRFVHKLGLYKLQCCLLMNGLVHESSE ERKPALNAEIMSFRDYLLSSTVSDTLEVWELKDLGHQTAQRILHASDPLQSMQEINQNFPSIVS SLSRMKLDDSIKDEIIANQRMVPPGKSLMALNGALINIEDLDLYLLMDMVHEELSLADQFVKLK IPGSAVHKILSAAPPTESNSFRVDFRSSHVHYLNNLEEDALYKRWRSNINELLMPVFPGQMRYI RKNLFHAVYVFDPASTIDMVLSLYQDSVPIRFGIILYSSRLISVIEENDGNLPVNNGSKTEEDI SILIIRLFLYIKETYSTQLAYQFLSNIHKSQNSGDDYNEESVEAHHVEGAFVDSLLSSAKSHPQ DVLLKLQKENMHKQEAEESSRFVHKLGLYKLQCCLLMNGLVHESSE(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |