Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d033726_circ_g.3 |
| ID in PlantcircBase | zma_circ_006903 |
| Alias | zma_circ_0000520, ZmciR46 |
| Organism | Zea mays |
| Position | chr1: 272336044-272339681 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | find_circ, CIRI2 |
| Parent gene | Zm00001d033726 |
| Parent gene annotation |
Probable serine/threonine protein kinase IREH1 |
| Parent gene strand | + |
| Alternative splicing | Zm00001d033726_circ_g.2 Zm00001d033726_circ_g.4 |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Zm00001d033726_T031:8 Zm00001d033726_T023:8 Zm00001d033726_T003:6 Zm00001d033726_T025:8 Zm00001d033726_T007:8 Zm00001d033726_T002:6 Zm00001d033726_T011:8 Zm00001d033726_T019:8 Zm00001d033726_T036:8 Zm00001d033726_T027:8 Zm00001d033726_T016:8 Zm00001d033726_T009:8 Zm00001d033726_T035:8 Zm00001d033726_T013:8 Zm00001d033726_T005:8 Zm00001d033726_T018:8 Zm00001d033726_T030:9 Zm00001d033726_T001:8 Zm00001d033726_T024:8 Zm00001d033726_T014:8 Zm00001d033726_T037:7 Zm00001d033726_T010:8 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.080704224 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
272336117-272336074(+) 272336131-272339611(-) 272336109-272339673(-) |
| Potential amino acid sequence |
MVTCIEDLQEIVNRRKHEALTVQTFGTRIEKLHREKYLQLCDSVDMDKVDSASTIMDEEDDVVR SLRASPVHPVKDRTSIDDFEIMKPISRGAFGRVFLAKKRTTGDLFAIKVLRKADMIRKNAVESI LAERDILITVRNPFVVRFFYSFTSRENLYLVMEYLNGGDLYSLLRNLGCLDEDVARVYLAEVVL ALEYLHSMHIVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDLSGPAVSGASLYGDDEPQM NELEQMDHRARRQNRSAVGTPDYLAPEILLGTGHGCSADWWSVGVILFELIVGIPPFNAEHPEA IFENIMNRKIPWPHVPEEMSFDAQDLIDRLSNLLILHDA*(+) MQVTIWDNALSSSRGVFAMHRAISASSTICQLNLVHQNSSLLGHVAKVFCDS*(-) MRFLHPEGYLLCIVQYQQVRQSVN*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | responsive to drought stress |
| Other Information | |
|---|---|
| References | Ma et al., 2021b;Zhang et al., 2019 |