Detail information of Zm00001d033726_circ_g.3


General Information
CircRNA Name Zm00001d033726_circ_g.3
ID in PlantcircBase zma_circ_006903
Alias zma_circ_0000520, ZmciR46
Organism Zea mays
Position chr1: 272336044-272339681  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ, CIRI2
Parent gene Zm00001d033726
Parent gene annotation Probable serine/threonine protein kinase IREH1
Parent gene strand +
Alternative splicing Zm00001d033726_circ_g.2 Zm00001d033726_circ_g.4
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d033726_T031:8
Zm00001d033726_T023:8
Zm00001d033726_T003:6
Zm00001d033726_T025:8
Zm00001d033726_T007:8
Zm00001d033726_T002:6
Zm00001d033726_T011:8
Zm00001d033726_T019:8
Zm00001d033726_T036:8
Zm00001d033726_T027:8
Zm00001d033726_T016:8
Zm00001d033726_T009:8
Zm00001d033726_T035:8
Zm00001d033726_T013:8
Zm00001d033726_T005:8
Zm00001d033726_T018:8
Zm00001d033726_T030:9
Zm00001d033726_T001:8
Zm00001d033726_T024:8
Zm00001d033726_T014:8
Zm00001d033726_T037:7
Zm00001d033726_T010:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTTCTGTAGGCAATTTTTGAAAATATTATGAATCGCAAAATACCTTGGCCACATGTCCCAGA
AGAGATGAGTTTTGATGCACAAGATTTAATTGACAGattgtcgaacttgctgatattgcacgat
gcatagcaaatacccctctggatgaagaaagcgcattatcccaaatggttacctgcatagaaga
tcttcaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTGTCGAACTTGCTGATATTGCACGATGCATAGCAAATACCCCTCTGGATGAAGAAAGCGCAT
TATCCCAAATGGTTACCTGCATAGAAGATCTTCAAGAAATTGTCAACCGCAGGAAGCATGAGGC
CCTCACAGTCCAGACATTTGGAACACGCATAGAAAAACTACACAGGTGAGATTTTTATTTGGAT
TTGGCCTTCTGTTTTCATTGATATCCTGACCACATAATAAAAATTATTCTTGTGGGCTACTTCA
TTTTAACTGCTCTAATTAATTCATCCTTCACATTTGTATAATCCTTCAGGGAGAAGTATCTGCA
GCTCTGTGACTCAGTTGATATGGACAAGGTTGATTCAGCAAGCACCATAATGGATGAAGAAGAT
GATGTTGTTCGTAGCTTGCGCGCAAGTCCTGTCCATCCAGTCAAGGATCGCACTTCAATTGATG
ACTTTGAAATCATGAAACCTATTAGCCGTGGAGCATTTGGACGTGTTTTCTTGGCCAAGAAAAG
AACTACAGGAGATCTTTTTGCTATAAAGGTATTCATTGGCCAAACTTTTTTGTTCTTTCATACA
ACCATGAGTACCTTTTGTTAGGCACTAGCCTTATGGTTCATACCCTGGCAGATCTTGTGCAAGT
AGTTCTACCCCAGAAATTGAAACTTTTTCGTATTGCTTCATAGCATGGGCATCCAATTACTTTG
TTTCCAAGTCGCATGCACATATTTCTTAGTGCTGTGATTGTTGTCCAACTAGTTTTATGTCCTT
GTGTCACCTTCGGATCCACAATGTGAGTCTGCCTGGTCCCTGCACCATCGATTCATTAACTGTT
CTCAAGAAGTTACACGTTACACTTAAACCTAATGGCTGTCATTCAAGCCTATCCAGTAATAAGT
TTCTGTTGAACTTGAACAATTCTTTTAAAGAGGAAACAATTATTGCAGCTTGTCTGATCACTTT
ACACACCCTTTATGATTTGAATATCCAATTAAACATTAGCATTCTTGTCTGCAAGTTGTAATTG
TGTTTTCTGGACCATGGCTTTGTCTTGATATGCAACAATTTCAGTGTTCTTTTCCCTACTGCAT
ATCATCTGAGAGCTCACAAGTGGTGCCGGCAAGTGTCTATTACAAACAGATTGCACCCTTGTCA
TGTCTGTGCTATTCTTGGAATAACTTTTGCATGATAGCTTTTATGCTGAACTACCTTGAATGCA
AATGGTAATACATCTGGTATGGGTTTCTTGTTGAATATATAACATATTGCTTGCTTCTTGCAAG
CATTATTCTAAGAAGTCTAGCAAGTAGCAATACAACAAGTTCTAATTTCAGTTTCATCTCTATA
AGAGTGGGTGTGTTTTAAGCTGGCCCGCCAAGTCTGTGGCAATTGACAAACCTCCTCTTTCACC
TGGGCTTGCTACTAGCAATGCTGAAACAACATAGGAGTGATCTGACTGCTGAAACAAAGTAGGT
GGATTTCTAGCAAGTAGAAATACGGAATACCATGGCACCAGTTTCACTACCATTTATCAGCATT
TTCCCTGTATAACCATAATAGAAAATTCTCACAAATACTTCAGTGCTGCTTTCTTTCATTTCAG
TGCATACATTGCTATCTTATTGGTCGATTTAATAAGATGTCTACTCTAAGCAGGTTCTTAGGAA
GGCAGATATGATTCGGAAAAATGCTGTCGAGAGTATATTGGCTGAACGTGATATCTTGATTACA
GTCAGGAACCCTTTTGTGGTAAGTGAACATAAAAATCTGCCCTGTTCTGAAACGCTGTGATTTG
ATTCTGAAATCCTCATGCTTTTGGAAGGTACGCTTTTTCTATTCGTTTACCTCACGGGAGAATT
TGTATCTGGTCATGGAGTACCTGAATGGAGGGGACCTTTACTCATTACTGAGGAATTTAGGGTG
CCTGGATGAAGACGTTGCTCGTGTATATCTTGCAGAAGTTGTAAGTTTGTAGTATCCATTAATT
TTCCATCTTTTTCCTTCCCTCGGTCTCATAATCAGTTTGTTCTGCAGGTACTAGCTTTGGAATA
TTTGCACTCTATGCACATAGTCCATAGGGATCTAAAGCCTGACAACTTGTTGATAGCCCATGAT
GGACATATTAAGGTTTGGAGACATGCACATACTCATTAAACCTTCTCTCGTTATACTCCGATTT
TTTTATTTGATGTTTCCTAGTGTAAATTTACACTATCCAACGTCAAATAAAAACAAATGGAGGT
AGTATTTTATTTGTTTGTTGTTAGATACGGCAAACGAAAGTTTGTTCCTCATGCCTTGCAAAGG
CAAGCTCTAACTTGTGTTGTCTAGCTGGTTGATTTTTTTTATGTATATATGTTATGTTCTTGTC
ATCAAAATGCATAATGGTCACAGCTATTGGCATGTACTGGATTTGTAATAGGAGAGAACACACA
ACTATTGAGGATAATCGTTTTAACTTTTTAGAGATCATGATGGATGTCAGAATGGTGCCTCTTT
GTTTTATTTTGAACTTCACATACTGAATATAAGGCTATGCTTATTCTTGGATATTTTTTCCCTT
GATCAAAAGCAGCACTTTGTTGTATTTCACAAAAAAAAGTACCAACTGTTTTTTAATGTTTATT
TCCCATGTCACTAATTTAATATCCTTTTCCTTTTATACTTCCATGGATATGCAAATTCATTTAT
GTTCTTGATTTGACATGGTCACTTGTACTAGTGTGTTTTCTATGTGCTGCTTATTAATGTTATT
TATCCAGTTGACAGATTTTGGGTTGTCCAAGGTTGGTTTGATCAACAGCACAGATCTGTCTGGT
CCTGCTGTTAGTGGGGCTTCACTGTATGGAGATGATGAGCCTCAGATGAATGAGCTCGAACAAA
TGGATCACCGAGCACGGAGACAAAATCGTTCTGCTGTTGGAACTCCTGATTATTTAGCACCAGA
AATCCTTTTGGGGACAGGACATGGTAAATTCTGAGTAAAGTCAGTTTTTAGGCTCACTATACCT
ATTCCTTTTGATCCATTTGATACTAATTACTTTATTATTATGTATATACTCCTAGGTTGCAGTG
CAGATTGGTGGTCTGTTGGTGTCATTCTGTTTGAGCTCATTGTTGGCATACCTCCATTCAATGC
AGAACACCCCGAGGTACTGTACATTATGTTAAGTGAATAATTTTTTTGTGGCTAGTCTACCAAT
CTTCCTGTAACTTTTACATGGTCATAAATCATAACCAGTGTTTTAAAGTCGTCGCCTAGGCGTC
GAGGCGCCCAAACAATCTGAGGCGCCTTGCTTGCCTACCTCGCCTAGGCGTCCAGGCAGTGGTC
CAATGTCTTGTCTCGCCATACCGCCTTAAGAACCATGATCATACATTAAATTATCAACACAGTT
GTAGCCAATCAGGGCTTATTAGATATTTTTCTGAAAAGAAGCGTTCATTATCAATGTGTGTTGG
CCATTGGAGCAAATATTCACCATTGTACTATTAGATTTCTGTAGACCAAGGATCTGAAAACTTT
GTTAGCTTATTTTCTACTTGTTTCTGTAGGCAATTTTTGAAAATATTATGAATCGCAAAATACC
TTGGCCACATGTCCCAGAAGAGATGAGTTTTGATGCACAAGATTTAATTGACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.080704224
Functional Information
Coding potential Y
Potential coding position 272336117-272336074(+)
272336131-272339611(-)
272336109-272339673(-)
Potential amino acid sequence MVTCIEDLQEIVNRRKHEALTVQTFGTRIEKLHREKYLQLCDSVDMDKVDSASTIMDEEDDVVR
SLRASPVHPVKDRTSIDDFEIMKPISRGAFGRVFLAKKRTTGDLFAIKVLRKADMIRKNAVESI
LAERDILITVRNPFVVRFFYSFTSRENLYLVMEYLNGGDLYSLLRNLGCLDEDVARVYLAEVVL
ALEYLHSMHIVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDLSGPAVSGASLYGDDEPQM
NELEQMDHRARRQNRSAVGTPDYLAPEILLGTGHGCSADWWSVGVILFELIVGIPPFNAEHPEA
IFENIMNRKIPWPHVPEEMSFDAQDLIDRLSNLLILHDA*(+)
MQVTIWDNALSSSRGVFAMHRAISASSTICQLNLVHQNSSLLGHVAKVFCDS*(-)
MRFLHPEGYLLCIVQYQQVRQSVN*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Ma et al., 2021b;Zhang et al., 2019