Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d033726_circ_g.3 |
ID in PlantcircBase | zma_circ_006903 |
Alias | zma_circ_0000520, ZmciR46 |
Organism | Zea mays |
Position | chr1: 272336044-272339681 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d033726 |
Parent gene annotation |
Probable serine/threonine protein kinase IREH1 |
Parent gene strand | + |
Alternative splicing | Zm00001d033726_circ_g.2 Zm00001d033726_circ_g.4 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d033726_T031:8 Zm00001d033726_T023:8 Zm00001d033726_T003:6 Zm00001d033726_T025:8 Zm00001d033726_T007:8 Zm00001d033726_T002:6 Zm00001d033726_T011:8 Zm00001d033726_T019:8 Zm00001d033726_T036:8 Zm00001d033726_T027:8 Zm00001d033726_T016:8 Zm00001d033726_T009:8 Zm00001d033726_T035:8 Zm00001d033726_T013:8 Zm00001d033726_T005:8 Zm00001d033726_T018:8 Zm00001d033726_T030:9 Zm00001d033726_T001:8 Zm00001d033726_T024:8 Zm00001d033726_T014:8 Zm00001d033726_T037:7 Zm00001d033726_T010:8 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.080704224 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
272336117-272336074(+) 272336131-272339611(-) 272336109-272339673(-) |
Potential amino acid sequence |
MVTCIEDLQEIVNRRKHEALTVQTFGTRIEKLHREKYLQLCDSVDMDKVDSASTIMDEEDDVVR SLRASPVHPVKDRTSIDDFEIMKPISRGAFGRVFLAKKRTTGDLFAIKVLRKADMIRKNAVESI LAERDILITVRNPFVVRFFYSFTSRENLYLVMEYLNGGDLYSLLRNLGCLDEDVARVYLAEVVL ALEYLHSMHIVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDLSGPAVSGASLYGDDEPQM NELEQMDHRARRQNRSAVGTPDYLAPEILLGTGHGCSADWWSVGVILFELIVGIPPFNAEHPEA IFENIMNRKIPWPHVPEEMSFDAQDLIDRLSNLLILHDA*(+) MQVTIWDNALSSSRGVFAMHRAISASSTICQLNLVHQNSSLLGHVAKVFCDS*(-) MRFLHPEGYLLCIVQYQQVRQSVN*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |