Detail information of Os04g0102600_circ_g.1


General Information
CircRNA Name Os04g0102600_circ_g.1
ID in PlantcircBase osa_circ_022860
Alias NA
Organism Oryza sativa
Position chr4: 182986-183272  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os04g0102600
Parent gene annotation Similar to Splicing factor 3B subunit 2 (Spliceosome associated
protein 145) (SAP 145) (SF3b150) (Pre-mRNA splicing factor SF3b
145 kDa subunit). (Os04t0102600-01)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-TG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGCCTTTATGTCCAAATAATAGGAAGGTATTTTGGTAGAACACCAACCAACAAAACTATGTCT
ACTATTTCTTCATGCATCAACTAACATACTACATACtgaagtacataaagaaggtatgtgctca
aattcaatacacatatttgttaaaccacaccacaacgatgtgtgcatctaagagaatgtgccca
aatctcac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGAAGTACATAAAGAAGGTATGTGCTCAAATTCAATACACATATTTGTTAAACCACACCACAAC
GATGTGTGCATCTAAGAGAATGTGCCCAAATCTCACTTTTTTGTTGCAACAATGAGAAGATATC
TAGGTAAAACACTAACCTCTCTACGCTTTGTGCATCTAAAAGGATCATGTGCCCGTTGCTCGCC
TTTATGTCCAAATAATAGGAAGGTATTTTGGTAGAACACCAACCAACAAAACTATGTCTACTAT
TTCTTCATGCATCAACTAACATACTACATAC
Conservation Information
Conserved circRNAs osi_circ_014323
PMCS 0.114111034
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017