Detail information of Os01g0585700_circ_igg.6


General Information
CircRNA Name Os01g0585700_circ_igg.6
ID in PlantcircBase osa_circ_002361
Alias NA
Organism Oryza sativa
Position chr1: 22777891-22779163  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os01g0585650_circ_ig.1 Os01g0585700_circ_igg.1 Os01g0585700_circ_igg.2 Os01g0585650_circ_ig.3 Os01g0585650_circ_ig.4 Os01g0585650_circ_ig.5 Os01g0585650_circ_ig.7 Os01g0585650_circ_ig.8 Os01g0585700_circ_g.1 Os01g0585700_circ_g.2 Os01g0585700_circ_ag.1 Os01g0585700_circ_g.2 Os01g0585700_circ_ag.3
Support reads 1
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGCAATTTGCTGAAGTTATTGGATACTTCTGATGCTGAAAATGTTTTGCCTACGACATATGGA
TGTTTACGCCCACCCCTTGGAAAACATCGTTTGAAGggacatccagaaatagttgtccaactcg
ttgacctgattggcatcacatcaataatggaggtaagcaggctatcaataattactatttgctc
tgcgcttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGACATCCAGAAATAGTTGTCCAACTCGTTGACCTGATTGGCATCACATCAATAATGGAGGTAA
GCAGGCTATCAATAATTACTATTTGCTCTGCGCTTGCATTTGGCTAATGCTGCCCTTGGGATCC
TTCAGGTGTTAATACGATTGATTGGTGCTGATGAGACCATATACTCAAACTATGGCGATACATT
GCAGTGGTTAGAAAATACAGATGTCCTTGAAATGATTGCTGATAAGTTTAGCTCATCGGTGAGT
TCCTAAAGCTTGTTTGCTAAGAAATGTATGTAATAAACATGGAAATGTTTTTAATCATCCATCT
GGCACAGTAGGTCAGCACTTATATCTGCTTGTAATTTCTATAAAATTAGCAGTATTTTGATGCT
AATCCCCTAAATATTATTATCCCATATTCCTATTTTTTATATGGTATGTTATTTTTATGCAGGA
CTCCCCTGAAGTGCATGCCAATGCTGCCGAAATTCTTTGTGCCGTGACTCGATGTGCTCCTCCA
TCTCTTGCTGCAAAGATATGCAGCCCAAGGTTTCCATTTTATAACCTTGTTACAAAGTCACAGT
TTAATCCTTATCTTGTGATTTCGGGAAACCTTTTTAAAATGAACTTTGTGCATGGATATTTTTT
TTGCAATGGACAGAAAAAAAGATGTTTATGCTGTTCTCCCAACTCTTCGATGAACTTTATAACC
CTAAAGAGGTTTTGAATAATTTAGAACAACCAATCAAACAAATATGCTGTTCATTGTTGAATTC
TGTTTGTGTCACCTTCTATCATATGTTCTATGAAATTTCAGTTTTGTTGGGAGGCTATTTCGTC
ATGCACTTGAAGAATCAAGGCCCAAATCCGTTCTAGTTCATTCATTGTCAGTGTGCATATCTCT
GTTGGATCCAAAAAGATTGGCATCAGCTTCCTATCAAGCATTTAGAAGCAACTTAAGTCACGGG
GCGTTGGTCACTGCCAGTCCAGAGACTGTTGATGGCATGCTTGAGAGCCTAGGTGAGTTCTGGA
TATGTCTTTGTGCTTTTTTTTGTTAGGAAAAAATCTTCTTTGGTTCATCTATACTCGACCTTAT
CATATGTTCCATTTCTAGGGTATCTTGCTACCTGCCCTTTGCAATGTTAAGTTTTTGTATATTG
GTTATAACTGACCATTTTTGTAGGCAATTTGCTGAAGTTATTGGATACTTCTGATGCTGAAAAT
GTTTTGCCTACGACATATGGATGTTTACGCCCACCCCTTGGAAAACATCGTTTGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.146904929
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017