Detail information of Os04g0559800_circ_g.5


General Information
CircRNA Name Os04g0559800_circ_g.5
ID in PlantcircBase osa_circ_024851
Alias Os_ciR4312
Organism Oryza sativa
Position chr4: 28051946-28053349  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os04g0559800
Parent gene annotation Similar to YDA. (Os04t0559800-01)
Parent gene strand -
Alternative splicing Os04g0559800_circ_g.2 Os04g0559800_circ_g.3 Os04g0559800_circ_g.4
Support reads 6
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0559800-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACAGACTATACCTGCCCCAACTGCTTTGCACTTTCCTTTGATTTAGGATCATCCAAGAATAGG
GTAACTTCTTTCATCGCACACATTTCACCACTATCAcccttcatactggctccatggcggtttc
gatgtagccatctccaggacagtgcatcccaaactccatatgtcaacagctaggttgcacccat
ttgagttt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 556
Transcript exons: 28051946-28052053,28052146-28052205,28052532-28052607,28
052703-28052863,28053093-28053155,28053262-28053349
CCCTTCATACTGGCTCCATGGCGGTTTCGATGTAGCCATCTCCAGGACAGTGCATCCCAAACTC
CATATGTCAACAGCTAGGTTGCACCCATTTGAGTTTTTTATAACCTCTGGAGCCATCCAATATG
GACTACCCTTAAAGGAGAAAGGACACTGCTGCCCATTGATATGTTTTGCCATTCCAAAATCTGC
AAGCTTAACACGACCACTAGGATCTACTAGTATATTTGCACCTTTAATATCCCTATGGACTGTA
TTCTTCGCATGCAAATAAGCCAACCCTGAAAGTATCTGCTGTGTGTAGCTGCGTATTGCTTGTT
CACCAAGCTGTCCATACTCTTGTAGAAGTTTATGGATAGATCCACCAGATACATACTCCAAGTA
TATATAAAGCTTATCATCAACCGTTTCTGATCCATAGTATTGTACGATATTTGGATGCTGTAGG
CGGCTCAATAGTGATATTTCCTGCCCCAACTGCTTTGCACTTTCCTTTGATTTAGGATCATCCA
AGAATAGGGTAACTTCTTTCATCGCACACATTTCACCACTATCA

Genomic sequence CCCTTCATACTGGCTCCATGGCGGTTTCGATGTAGCCATCTCCAGGACAGTGCATCCCAAACTC
CATATGTCAACAGCTAGGTTGCACCCATTTGAGTTTTTTATAACCTGCGTATGTGTTGCATAGT
ATGTGATGTACAGAAATGGCAATAAGATATGCATGAAACAAAAAATTAACAAGTAAAGATTTTC
AGTGATACCTCTGGAGCCATCCAATATGGACTACCCTTAAAGGAGAAAGGACACTGCTGCCCAT
TGATCTGCATAAAGACACATTTAATACGTATTAATGAGTAAAATACTTCCACATTATACAAAAG
GCATTTTGTAACTTATCAGGAGTGAGGGGGCTAGCAAGGTTTCAAGCACCCTTAACAGCAGTAC
TCAATCAATGCATTAACCAGTGACAGGAGCTACAAGATCAAGTTGATATAGATACTGCTATATA
TTTTTTGAAGAGCTCGATATAATTCAAACAGTTGTGACTATGATATGAGGCATAGATGCAGAAA
TGGAATGACACGGAAAATAAAGTTCAATTGACAAAAGTCATTTTCAAAAAATTAAAGTGGGCAG
AAAAACTTACATGTTTTGCCATTCCAAAATCTGCAAGCTTAACACGACCACTAGGATCTACTAG
TATATTTGCACCTTTAATATCCCTGCAAAATTGTGATGAACAGGACTTATAATTACACCATAAT
TCCACCGATACAAACAAACCAAAGAAAAGAGAGAAAACCAAAGAAATTGCTACCTATGGACTGT
ATTCTTCGCATGCAAATAAGCCAACCCTGAAAGTATCTGCTGTGTGTAGCTGCGTATTGCTTGT
TCACCAAGCTGTCCATACTCTTGTAGAAGTTTATGGATAGATCCACCAGATACATACTCCAAGT
ATATATAAAGCTTATCATCAACCTGTATTGGGGCACAAATAATAAGTGAAGCCAAAAAAGAAAA
TCAAAAGTGGTACATAAATAACTCATTAATGAAATCCTAGATGCTATCATGCAACTTCTTGTTA
CCCTTGGTAAAGGGAGGAAAAAAATAATTATATAATGACCAAACAGGAAACAATAATTGAGTTA
ATGGTTCCAAGCAAAGGAAAACCTAGCCTATGTAAACAGACTGAAGGCAGCATTTATACCGTTT
CTGATCCATAGTATTGTACGATATTTGGATGCTGTAGGCGGCTCAATAGTGATATTTCCTGAGA
AACAAAAAAAGAAAAACAGGGAATCATATATTGAACAGGAAAAGACATAATCTGAACTTCTTTT
GCAACTGTAGGTTAAAGCACAATCAACAGACTATACCTGCCCCAACTGCTTTGCACTTTCCTTT
GATTTAGGATCATCCAAGAATAGGGTAACTTCTTTCATCGCACACATTTCACCACTATCA
Conservation Information
Conserved circRNAs NA
PMCS 0.280563402
Functional Information
Coding potential Y
Potential coding position 28051955-28053349(-)
Potential amino acid sequence MKGDSGEMCAMKEVTLFLDDPKSKESAKQLGQEISLLSRLQHPNIVQYYGSETVDDKLYIYLEY
VSGGSIHKLLQEYGQLGEQAIRSYTQQILSGLAYLHAKNTVHRDIKGANILVDPSGRVKLADFG
MAKHINGQQCPFSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATSKPPWSQYEG*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015