Detail information of Zm00001d046672_circ_g.2


General Information
CircRNA Name Zm00001d046672_circ_g.2
ID in PlantcircBase zma_circ_009999
Alias zma_circ_0003028
Organism Zea mays
Position chr9: 101704791-101705045  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d046672
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing Zm00001d046672_circ_g.1
Support reads NA
Tissues leaf, root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Zm00001d046672_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAGTCTGTGATACATGCTAGGGATGATCTTAGCTTGGCTGCCAAGAGAGGAGTCTGCTGATCC
TCGCATTGCAATTAAGAGAGCAGTGCGCTGCAGAAGgtgcaagggttatggacacaacaaggca
acctgcaaagttcctatcagcagtttcagcacgtagtatttactcatcaaatcagttgtgcagt
gtgcatta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGCAAGGGTTATGGACACAACAAGGCAACCTGCAAAGTTCCTATCAGCAGTTTCAGCACGTAG
TATTTACTCATCAAATCAGTTGTGCAGTGTGCATTAGTGTGGAGAGTTGTTCGTGTTATTCTCT
GCAATGTTAGTGTTGATGTTTCTTTTGATAGTCTGTGATACATGCTAGGGATGATCTTAGCTTG
GCTGCCAAGAGAGGAGTCTGCTGATCCTCGCATTGCAATTAAGAGAGCAGTGCGCTGCAGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.891660131
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b