Detail information of Csa3G228870_circ_g.5


General Information
CircRNA Name Csa3G228870_circ_g.5
ID in PlantcircBase csa_circ_001714
Alias Chr3:14955837_14959832
Organism Cucumis sativus
Position chrChr3: 14955837-14959832  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method CIRI2
Parent gene Csa3G228870
Parent gene annotation NA
Parent gene strand -
Alternative splicing Csa7G451960_circ_g.1
Support reads NA
Tissues leaf,root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Csa3G228870.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATCCCCGCAAACAACAAGAACATTATTCTCCTTCAGGAGACGCAACATATCACCTCTTAATGA
AGCAATGGGAAGCGCAGCTCTGTTTTTCAACATCTCctggcattatctagacgaacatgataac
caactaaagacccatttgaacctggggcaggctcgcaacgttcatcagaaactctttccgcaac
cgaaatag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 311
Transcript exons: 14955837-14955937,14959145-14959231,14959710-14959832
CTGGCATTATCTAGACGAACATGATAACCAACTAAAGACCCATTTGAACCTGGGGCAGGCTCGC
AACGTTCATCAGAAACTCTTTCCGCAACCGAAATAGCCGCTATTCTTCTTGGTTGTGTGCATAC
TATGTTGCACAGTCCTCCACATCCTGATTCGATCATCTCATCCAGTATAAATTGTGGGACCTGA
GTTGTCTTTCCAGAACCTGTATCCCCGCAAACAACAAGAACATTATTCTCCTTCAGGAGACGCA
ACATATCACCTCTTAATGAAGCAATGGGAAGCGCAGCTCTGTTTTTCAACATCTC

Genomic sequence CTGGCATTATCTAGACGAACATGATAACCAACTAAAGACCCATTTGAACCTGGGGCAGGCTCGC
AACGTTCATCAGAAACTCTTTCCGCAACCGAAATAGCCTACAACATTAAGTACCATAGTTTAGG
TCACAGAAGCTAAGATATCCATTCATTAAGCAAGCAAGCAAAAAAACACCTACTGGATTTGTTT
CATGCTTGATGAAAAAAGAAAAACAATTCTAGGTCTAACTAGTATGATGCGCCAAGAAGCATGA
TAACATGTTAGTAATATATCAAGTCCACTCAGGGACAGACACTGCAACATGCCAATTAAAGACA
GTGTAGGATAAGGGACACATTAAATTTTAATATCACAATGCCACGTATATTTGTTCTTTTAGAA
AAGGAAACGATCCTCTCCATTAAGAAAATGAATGGGAAAAATAGCGAGAACATGTGCCCATGAA
AGGTAAACACCTCAATCCATGGAAAGAGTGCACGAAGCCAAGGGATTGAGCTACGGACCCTCCA
AGTTGTTTTCTTATCGTGAAATACTCGTTGATACCTTTCAAACCATATTTTAGACAGCAAAGCT
TTCACCGCATCGGTCCACATCAATTTGGCACTCTTTTTAGGAGAAGGAGCCGTCAAAAACTGAG
ATCTGCAACCTCTTTTCTGAAAATAGTATTTTCCTGTTCTGAGGCCAAATTTGGAGCCAAAATT
TCCGGTTCTTCACAGCTAACTCTTCTGGAAGAGACATCATCAAAATCTTCCATATTTTTAAGAT
ATGCATGCTTCTTTTGATTCTTTTTGGGTATCTGTTCAGCATACAGCATCTTGGTGGTGCACCA
ACTACACCAATTTATTTTGTAACTTTAGTCTTTTGATGATCTCTAGCAATTGAAAAGCTCTCCT
CTAGCTCCCTGGGAAGGGGTTTTCTCAACCTGTTGCCCTTGGGTTGTTTCAATGCTTTTTGATG
AAATATACATGTGTGTTTCTTTTTCTAAAAAAAAGTGCTATAAAAGATGGAAAATGTCCTGAAC
ATAAAAACTGCCTCTCCGATGAACAAACATCTTTTTACAGCTATCTGGAAATCAAACAGCCCAT
GGATAATTAACATCTTGATTTGGATTATGGTTTTCGAGACCCTCAACAGTTCAGAAATCTTGCA
AAGGAAATCCCCTAACAAATGCTTCGTTCCTTCGATTTGTCCTCTATGTATGAAGGCAAATGAG
GACCTTCCTCATCTTTTTATGAACTGCCCTGTTTCATCCTTCTACTGGGTTAGGATTTTTCTCC
TTGTTCAATTTTTATTGGGTCTTTGATCGATCCCTAAGTGCTAATGTGTTTCAACTTCTGTCGG
GCCCGTCTTTAACCAAGAAATCACATTTAATATGGGAAAATTTGTCAAAAGCTCTCCTCGCAGA
ATTATTCTTCGAGCGTAATCAACGAATGATCTCTTGCAAGTTTACAGCTCTAAAATCCAAGTCC
CTGAGCATTTTTCCAAGTCAATAAATAGCTCTTCTCCTTCAAAATGTCTCAACACTTCAAAATC
CTCCACCTCCATTGCAAAGACATCTTGTCAGCAAGACTCCTCTTGTAAAGCTGACTTAAGTCCT
AAAGTTCAGCCAGAAATTTTCTCTCCTATCAGTGTTAGCAGTGAAGAATCAGTTGTTCTTAGTG
AAGTTGACCCTAAATTGGATTCAGAATTTGAAGGGAGGGACTTAATTGTTTTGTTTAATAAGGA
AGGTTTTCTCCCAAATAATTTTCCACCAGATTTTCCTAATGAGTTGGTGTCAATAGTCAGTGAA
TGTGGAATTATTCTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNAATCAAGTTATGGTTGAAAAGGGTGCTGGAATCTATT
AAAGTGGCTTATGGGAGAAATATTTTGGTATATATCTTTAGTACTTCTTCATGCATGGGGGATG
AGTTTTCAATTGGAACATCAATTTGAAGATTCAACATGGTGTGTTATGGCGTTGCATGGGATGT
ACAACCTTTTGCTGATGCTGATATTATGAAAGATTTTTTTGTTCCTCTTCTGGTTTTGGTCTCT
TTTGAAAAGTTAGCTTTGAGTTCACCGGTTGCTTCTTTTTGCTAGTCTCTAGATCCGAATGGTT
TCCTTTTGAAAAAGTTATTTTGTTATGCTTTGTGTTTATTTCTCTTCGTTTTGGTTCTGTTTTA
TCTTGATTTTTTCTGTTGGTTTTCATCTTTTTAGCTTGTTCTTTGCGTTTGTTTTGTTTTGGTC
GTTTTTTCCTTGTATTGGCCGAGGTCGTCTTTGGGCAGTTTGTTTGATTGTTTTTCTTTACTTT
TTGCTCTTTGTATAATTCTCTTGTACTTTGAGCTTTAATCTCATTTTCCTTTATTAATAAAAAA
AACTTGTCTCCGTTTCAAAAAAAACGAATGTTCCATGATAAAGCAAGACCAAGGCCAGAAAATA
TGCGTTCATCTTAATGCTTCAGCTTGGTGCTCCTTAAATAAGGAGTTTGAAAATTATTCCATTC
AAGACATTTGCCTCAACTGGACTGCTTTTCTCTCTCAACCTGCATGTTAGTTGCTGATTAAGTC
TATTGTTTGTAGATTACTCAGTCTGAAGCTTCTTCACAGTAAACCTCCTCCTACGTTCTGAAGC
CTTGGTGGATTGTTCATTTTTAGCCTTTTAATTTTGAGTTTTATATTTTTTGGCTTCCTATTTT
GTTAAACTTGTTTCTGGTCCTTTATTGTCTTCTGACCCCTTGCATTAAGCTGGACATTATTTAA
TTTTTGCAAGTTTTGGTTTTGTATGCTCGGCATATGATGATTGGCGCTAAGGGGCTGTCAACCT
AGTTAAGATGTCCAAGTGCGCCTCCTGATTTTCCTTGTTTTAGACTTCTTTATTGCTCTCTTTG
AATAACTCTCTTGAACTTTGAGTTATTATTAATAACGAAGTTTATATCTCTGTTTAAAAGAAAA
AACATAGGTTGACAAATATTATCTGTCTTACTTTCTTCCAGAGCTTCAATTTGAACCAATACAA
ATCAATGATCAACATCGACAATATATTTGCAGGAAAATACCAATAAGAGTTCAATCCATCTGAT
TTATAGAAGAATAGCAATAAGATTTAAACCTGTATGATTTGCTGGAGAATAGCAACAAGATTTC
AATCTCACAAACATAAAGATCTCAAAAGTATAACTTATGGTTACCGCTATTCTTCTTGGTTGTG
TGCATACTATGTTGCACAGTCCTCCACATCCTGATTCGATCATCTCATCCAGTATAAATTGTGG
GACCTACATAAAACAATTGTTAGAGAAATCTTCAAGAGAAAAATAAGGGGAAGATCTTAGGAGA
AACATTTTGTATATGTGCTATTAATGCAGTCGAGCAGAGCACATTAAAAGGGGAAAATAGTGTT
AGGATATTATCTAACAAAAATACTTAAAAGAAACACCAAAATATCAATAAACAATTTAAAGAAA
AATAGCCTTACGTGAGGGCAATCTCTTTCCCAAATTCCGTCAAAGAAAAATCCTACCGAAATGA
TTCACATCCTCTAAGGTGAACAACTCCTCTTATTTAAAACCAAGACACCACTAGCTAATTGCCC
ATAATACCCCAAACTAATACCCCTACAAATCTTACCCATATACCGTTAATAAGTACTATTTCAT
GAACTAGATATTGGTGAAATCACCTATTCATTAATTTTTTTTCTTCTTTAGAGAAAATACAATA
ATATAGGAATAATTGCACTTGAAACAAATGAACCTGAGTTGTCTTTCCAGAACCTGTATCCCCG
CAAACAACAAGAACATTATTCTCCTTCAGGAGACGCAACATATCACCTCTTAATGAAGCAATGG
GAAGCGCAGCTCTGTTTTTCAACATCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.428126541
Functional Information
Coding potential Y
Potential coding position 14959831-14959825(-)
Potential amino acid sequence MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNIVCTQ
PRRIAAISVAERVSDERCEPAPGSNGSLVGYHVRLDNARRC*
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to salt stress in root
Other Information
References Zhu et al., 2019