Detail information of AT2G20440_circ_g.7


General Information
CircRNA Name AT2G20440_circ_g.7
ID in PlantcircBase ath_circ_014003
Alias NA
Organism Arabidpsis thaliana
Position chr2: 8812256-8812665  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene AT2G20440
Parent gene annotation Ypt/Rab-GAP domain of gyp1p superfamily protein
Parent gene strand -
Alternative splicing AT2G20440_circ_g.4 AT2G20440_circ_g.5 AT2G20440_circ_g.6 AT2G20440_circ_g.8 AT2G20440_circ_g.9
Support reads 1
Tissues inflorescences
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G20440.4:2
AT2G20440.1:2
AT2G20440.3:2
AT2G20440.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTCCCATTTTCTTGAACGACTGCCATTGTGACGTACTTGCCACTACCAATGACAGGAACCATT
TTCTTACATTCTTCTTTCCATGCACCGTACTGCTCCcctgaacataaccaatatcaagattcaa
ccacgtatatatggcaagaacgtcccatagttttgattgattacgatcattctcataaaaacag
agataccg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGAACATAACCAATATCAAGATTCAACCACGTATATATGGCAAGAACGTCCCATAGTTTTGA
TTGATTACGATCATTCTCATAAAAACAGAGATACCGATCTGTTCTAGCAACATCAAGGCCTGAA
ACAAAATATACAAGAATATGTAAAAAGAGGTTATAAGAAGATAATCAGATAGAACTAAACTTAT
TTATATGTAAAGGCATACCGATCTGGTGTAGTGAGAGCATCCATTGTAGCACTCTCTCATCTGT
AACAGTGTTTTTCACGATCCATCCTTGGTTTTCTACAGAAGATTCGTCTATTGGGTTCCCATTT
TCTTGAACGACTGCCATTGTGACGTACTTGCCACTACCAATGACAGGAACCATTTTCTTACATT
CTTCTTTCCATGCACCGTACTGCTCC
Conservation Information
Conserved circRNAs NA
PMCS 0.184161159
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017