Detail information of BGIOSGA017306_circ_ig.1


General Information
CircRNA Name BGIOSGA017306_circ_ig.1
ID in PlantcircBase osi_circ_014976
Alias Chr04:34487813_34492796(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 32977599-32982582  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA014158_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTCGTCGAGCAGCGCTGCGGCATTTCTCAGAACACCCGTCTTGGCCTTCTCCTGCGAGGACG
CCATATGTCTCCAAGAAACCCAAGAACAGCTGCAATcctggtcttcttgcaaaagatgagcctt
tttttttcctgtaagtctctaccacaaacactactgtcaagtgtcaacaaatcagcttaacatt
cagtaatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGTCTTCTTGCAAAAGATGAGCCTTTTTTTTTCCTGTAAGTCTCTACCACAAACACTACTG
TCAAGTGTCAACAAATCAGCTTAACATTCAGTAATGCAACGCATTCAGAGAACTACAGCTTCTC
GGATGTGCATTTCTCTTGTGGCCTTCATGTCGATATAGAGCTTCATCCAGAAAATGGTACTACT
AAGCTGCTTGAATACAGTCGTTCAAAACATGCATGCCATTCTCGCTCATCTGTTGTACTTCTGA
AGGTGACAAAATCCGGATGCACCGGACACAGTTGATGAATTCCCTGTAGAAGCAAAAGCACATA
GGTATGAGTGTCAATTAATATGCTGACCAGGAGTAGAAAGAACAGGAGACACCAATTCGAAGAC
ATGTCTACTTACTCCCATGGATCATCTCCGACAAGAAGAACATCATTTTCGTAGTCGACATATA
CAAGCTTCCACTCTGAACTGCCAGGATGCTCCAATTTCCCCTGGAGACCAAACATGCAAGCGAT
GGCAGATCTCAACTCATGGTAATTTCTAAACCCTGTAACATCGATAGATCTTCCAACTGATCCT
TGCTTTTGAACCTATGTATTACAAAAAAAAACATAATAGATAGTTGTTAAGTTATATTTACTAT
CAAGAGCATTTGACAAATGGTAACATATAAACAGTCAAGTAGTATAAACCTTTGTATATGTCCG
CACTGGTGGTTTCATCGGCTTCGCACTTCGGTCAAGGCTGTACTCGGTTGCATCCATACTGCAA
GCTGATGTTCCCATGGAATTGGTATGAATCTCTGGCAAAGACAAGATTTGGGATTCTTTTAAAC
GTGGCAACTTTGAGTACATCCCTGCATCAAAGCCCCCAGTAGACATTGGTTGAGAGCATGAAGT
GGTGTTTATGCTTCTGTGTGTAGATTCCATGTGAAGTCCACTTAAGTTTGCACTCTGACTTGCA
CTCTCTTCAGAAAAACTCATCTGTACAAACGAGTTGGACGTGCTTGGCAAATTGCTTCCATCAT
GCTGGAGTTGGACCTCCAAATTTTGCATGTCAGGTGAAAGAAAGGTTAGTGAATTCAGATCTGG
GCTGGAGATGAATTCTTGTATGGAATTAGGAAGGCAATCAGAAAGACATGAAGCCTGAAAAGTC
TCCATAGTATCAGCAATCATTGAGGGAGGTATATCTGCAGAAGAACTGAAAATGTTCTCTGACA
CACCGGCTGGTTGAATTACATTGGAGTCTTGGTAGTAGGAAGGCTGAGTCATCCAATCAAGACC
ATCAATGAACTGCGAAAAACACCCTTGGTTTGGAAACGAATTGACAGACTTTCCTCCATCAGGT
GATTTTGATGATTCTACCTTTGGTGGCGACAGCACTCCCTTTTGTTCAACCTGATGGCCATGCG
GCTGTCCAACAAAATTACCTTGAGTAAGTGCACCTGATGAATCTTCAATATTTCCACAGTTTAC
TTGTTCATCACAACCAACCAGTTTCGATTCTAAACCAACCTGCTGATTGTCACAGATCCAAGAA
GGGGCTGAAGAAAGGTCAGATTTCTCTGAAACGGTTTTGTGAGGCAAGCCCTTCTTACTCCTAC
GAGTCTTGCCTCTAGGCTCACCCTTACTGTTTTGCTCCGAAGTACTTCGACTTGTGTATGAATC
TGTGTTTCTTGGATCTCTTGATGTAGCATTCAACTTTGACTCAGAAATCGAATCAATGACAGGC
TGGACTTCAGAGCCTTCAAGATCACCATTCTGCATATTTGCCATATGGAACTGGTGCTGGGCAT
CATCTGAAGGCAGGCTTTCTTGCTTTGTCAAACAAGCTGAAGTGCTAACTGTTAGAGGAGGGAT
ATAATTTTGCTTCACATTTTGGATAATACTAGAATATGAGGACTGGTGAAAACTAAGGGGACTC
CCAAGGGTTTGACCAGATTGGTTGAGAAGCATGATAGCCAATTCTGATCCAACAGCTGGAATGT
GCTGCAAACTGCCATAGGGATTACCCTGAGCCCTTGGAAATGATGACATATTTGCTGATCCAAT
TTCCATCCCAGGCACTGAAACTGCAAAAGGGTAAGGCATGTTTCAGCATATTGCACGACCATAA
ATATTTGTATAGCATATGTCAGAGACATACCTCCATAACCAGGAAGACATTGCCGCTTTGAATT
CAAGGTCGACGAAGGGAACACAAGAGTGTTTTCTGGAGTTTCAATATCCCATATGCTCACACGC
TCAGGTCTTTCTCCATACCCATGTTCATCCCATTCGACCTAGTAGCAAGAAGTATATAAATATC
AAATACACCATGATAGGCAGAATTCTGAGTTTTCCTTAAGCTTTTGCATGAAAAAGGCACCTGT
AAGTTGCGCCATTTAGAATTGGGCCATCTCATGGGGTCGTAGTCACTTATTCCCACAACTGTAC
CTGTGTATCTGTAAAACAAGACAATTTTGTTTACAATATGGAATATGTTTTCTAGCTGTACTTA
ATCAACAAAACGCTAAACTCAACATAGAACGCAAGTATGCCCATGCAACGACATTTGATGTAGT
CATTATTTTTCCAATGTGAATCATGAAAATTCACAGTTGAATTATTTATACTTTTAAAGCAGCA
TAATCCATTACACGGTTGTACACCAAGGTCTAGTTTGTGGACATAAATAAATAGCATAAAGATA
AAATCTGAAACAGAAAACAAAAGCTATGTAAAATGAGAACAAAAAGTGGACAAACCTGCGCTTG
CTTGACTCCTCTGTCTCAAACATCATCGCAAATCTCATTCCAACTGATGGTTGCATATATGTTG
CCTTGTTGTACCTTGCTACAGGAATTACAAATGGCGAAGGACTTGTCCTATGGAGATTCCATGA
ATGACCAAATGCTCACCAGGAAAAAAAAAAGCATATGTAAAAGGGTAAGTAAATTTCTGTACCT
AGGATTGTAGTAGATAGTAAATGAACTACCACTTGATGCGGCATGAGCTGCAGCAGCAAGAACG
CCAATGTGCATGCTATCAGTAGATAGAACAGAAGATGACAACATTGTTTGTTGTCGCGTGGCTC
GCCTAACACCCAAAAGAAGTTGTGACTTCTCATCCCTGCAATCAGGAACTTCTGTCAAAAATGG
CATTTCATCCTCACATATTTGTGAAGAAAATATTATACTATTACATACAAGCTGTTGTCAGTCC
GAGCGAGTAAAAAGTGCGGTGTCCTATAACAGTCATATTCACATTAGAACTGACAAGAAATAGA
AAAGTTATTGTTGTTGAGATTTTAATATTCTAGAAAGTTGAATATGTATATATTGGTTAAGGTT
AAGTAGATAGCCGCTGTAGGAAAATCTAATACTGGTAATGGACATTCTTTCGAAAGAGCAAATA
ACATAAGCAGTTCTTGTGGTATTTCAATGCATGAATTGTTGCATAGGGTTTAGTATCAAAAGGC
TTAACAATCTCAGATTCAATTTTCTGATAGCACACACAGGTTAAGTAACAAACAGACTTTGCAT
GTATTTATAGAACTTATTTCACCTTATAAATAAGACAGAGTCCCCTGCTTTTAGACGCTTTGCC
CCAACAAAGAGACTCCATCCAGTTGTTAGAAGATGTCGTTTTGGCTGTCCTGCAAGGGACAAGA
AAAGAAGAAACTTTTAGGAGACAGTGGCCCAAGAAGCATATATTTATGTATCAATGAACAAGAC
AAATAAAATCCGAATATTGTTTGACCCTACCACGATAAATGTGACGGAATGTCCACATGTTATC
ATGCAAATCTCGAACAATAAGCTCCTGGTTAGGAGGTTGCATTGAGTAATCCTGTCGGTACAAA
ACTTAAACCCATGAGCTGAAGCATTTTTTTACAGAAAAACTATGCGGCAAACAAAATGTAGATA
AAGGCTATACCAGTTGTGGGAACAACTTCTCTGCAGCCCTTCGTGGCACCGAGAAACCACCATG
TGTACTCGTATCACTTGCGGTTAAATTCTTGCAGAAATATTCAGTGGGGTGCTTGCTTTTGGTA
TAAGCACCAAGAGTTGGAATAGGGAATACATCCGTTTCCTACAATAGACGGCACAAATAAATAT
TAATTTAGAATCCATCTTTTATTCCTTGCACACTGAATTTTTGTTTCTGTAATCACATTTTATG
CATTTCAATAACAATTGGTGTTTACATTTTAATAGAACCAAATAAAGTAGTACAGAACTCAGTA
CACAATGTAACAGAGAAACATCATACTTACAGAGTTTACTGGCTGAAGGGTCATCTGTGCATAA
ACTTCATCAGTGTCCTTGTCGGCCTGTGCAAAACAAACAATCAAGCACAGGCAAAACACATTTG
GCCACAAATATGTTTGGAATTGAATTTGCTTGAACTCACATGCAAGGTGATGTTGTGAACTTGA
CACAGCAACTGAGATGGCAGGTTTGGGTAGTTCGGAATGCGGGAATTTGGAATCTTTCTAGTTG
TCGCTGCAACCTGCAAGGGCATCATCCCTTCAACATTGATCATTCCAATAGCAATCCCAAAGTA
TTATTGAGCATCAATCTGACCAAATTGTTGTCTATGGTTGCAGCATTTCAAAACGAGATTAGCT
GCAATTTGTGAAAAAAGACAGTAAGATTGACCTGTTCACTGTGCCCCTGAGGGAAGTAGTACAC
GAGGCTCCCCCGCTGCGGCAAGCACACAAGCGGCCCGGCACAAGCGTGCCAGAGCTCCGAGTTG
ATCACCTTCTTGGCACCTGAAGAAGGAACGGACGCTACTCGCATCATGCCAAAAATTGCAACAA
ATTTGTGCGCAATTATGCATCAACAAGCAGCAGAATCTGACTGAAAGTCTGAAACACTCACCCT
GTGTTTCTCCCATGAGCTGCATTTCGTCGAGCAGCGCTGCGGCATTTCTCAGAACACCCGTCTT
GGCCTTCTCCTGCGAGGACGCCATATGTCTCCAAGAAACCCAAGAACAGCTGCAAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021