Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d036971_circ_g.5 |
ID in PlantcircBase | zma_circ_008999 |
Alias | zma_circ_0002287 |
Organism | Zea mays |
Position | chr6: 107856552-107862177 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d036971 |
Parent gene annotation |
ATP/GTP-binding protein family |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d036971_T017:10 Zm00001d036971_T035:10 Zm00001d036971_T044:10 Zm00001d036971_T008:7 Zm00001d036971_T015:11 Zm00001d036971_T037:10 Zm00001d036971_T042:10 Zm00001d036971_T024:10 Zm00001d036971_T029:10 Zm00001d036971_T019:8 Zm00001d036971_T040:11 Zm00001d036971_T012:7 Zm00001d036971_T034:11 Zm00001d036971_T022:11 Zm00001d036971_T052:11 Zm00001d036971_T032:8 Zm00001d036971_T016:7 Zm00001d036971_T005:7 Zm00001d036971_T041:10 Zm00001d036971_T021:10 Zm00001d036971_T033:10 Zm00001d036971_T048:10 Zm00001d036971_T023:10 Zm00001d036971_T047:10 Zm00001d036971_T049:10 Zm00001d036971_T045:1 Zm00001d036971_T051:8 Zm00001d036971_T031:11 Zm00001d036971_T010:11 Zm00001d036971_T011:8 Zm00001d036971_T027:9 Zm00001d036971_T004:10 Zm00001d036971_T003:10 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.1223063 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
107862103-107862119(-) |
Potential amino acid sequence |
MFPPKGPNHYGQPPPYGGQQPYSQIPSSTGFAAPTAAGGTDGGRFGGRGGQGAAAQYGGPYASV YGTQQLHVVPTFFLANISTEYPRSFQQVGGLGGKGPASSSLPSLPNRPTSLTESSKFTSAPVGS GLARPNDDYMAVRGYAQKQDQYGTDYPLERRMYGEHSANLGRRDGLSDLDRRYTDQIAAGHQSS SMRHQQLLKGQLQPGSDTRQADYFAGRSAPVHQASQEIGVYGRVDADNHNMSILGTTPYGRQQA ASLLEGAPRTNIDSLYGQRSSSAGFGAGLPPGRDYASGKGLLHPSSDPDYRDSILPHVHPGVSM IDDRRIDRIGSRRELDLRDEERRRDLILEREKELEWERERELRDFRDRERERERERERDLERLL REREREREREHERERERERLRERREKERERERKRGADPRREHTPSRGPGDRRHSSLRSEKPVRR ISPRRDAGHRHRSPVKEIKREYICKVFPFRFVDDERDYLSLTKRYPRLAITPEFSKIVLNWAKE NLNLPLDTPVSLEHDIHDSDDGADEGAIISTEKTSSFNTPATIWNAKVLLMSGMSKGAFANITS LRSTEERVVHLNNILKFAVFKKDRSLFAIGGPWNADIDGGDPSADCSCLIRTAIRCLFVRVDCF VRVWCPCKSP*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |