Detail information of AT3G07760_circ_g.1


General Information
CircRNA Name AT3G07760_circ_g.1
ID in PlantcircBase ath_circ_020360
Alias 3:2477541-2477733
Organism Arabidpsis thaliana
Position chr3: 2477541-2477733  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT3G07760
Parent gene annotation Sterile alpha motif (SAM) domain-containing protein
Parent gene strand +
Alternative splicing AT3G07760_circ_g.2
Support reads 1/1
Tissues root;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G07760.6:1
AT3G07760.3:1
AT3G07760.4:1
AT3G07760.10:1
AT3G07760.9:1
AT3G07760.1:1
AT3G07760.7:1
AT3G07760.8:1
AT3G07760.2:1
AT3G07760.5:1
AT3G07760.11:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTTACTACCGAGCAGATCCTTCACTTCATAAGGAGGCATCACATGAAGTGGGGAGACTTCAT
CACCCTCTGTAAAGAACTCAGAAGGATTAAAGgatgttgggtcttggctcgaggagataaacct
tgggggctaccgccagattttcaaagaaaatggtgtcaatggagaatatctagaaagcatgtct
g
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 193
Transcript exons: 2477541-2477733
GATGTTGGGTCTTGGCTCGAGGAGATAAACCTTGGGGGCTACCGCCAGATTTTCAAAGAAAATG
GTGTCAATGGAGAATATCTAGAAAGCATGTCTGTGTTTACTACCGAGCAGATCCTTCACTTCAT
AAGGAGGCATCACATGAAGTGGGGAGACTTCATCACCCTCTGTAAAGAACTCAGAAGGATTAAA
G

Genomic sequence GATGTTGGGTCTTGGCTCGAGGAGATAAACCTTGGGGGCTACCGCCAGATTTTCAAAGAAAATG
GTGTCAATGGAGAATATCTAGAAAGCATGTCTGTGTTTACTACCGAGCAGATCCTTCACTTCAT
AAGGAGGCATCACATGAAGTGGGGAGACTTCATCACCCTCTGTAAAGAACTCAGAAGGATTAAA
G
Conservation Information
Conserved circRNAs NA
PMCS 0.669761374
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020