Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G06700_circ_g.2 |
ID in PlantcircBase | ath_circ_001033 |
Alias | At_ciR4128 |
Organism | Arabidpsis thaliana |
Position | chr1: 2053786-2054248 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | KNIFE, PcircRNA_finder, find_circ |
Parent gene | AT1G06700 |
Parent gene annotation |
PTI1-like tyrosine-protein kinase 1 |
Parent gene strand | - |
Alternative splicing | AT1G06700_circ_g.3 AT1G06700_circ_g.4 |
Support reads | 4/71 |
Tissues | leaf/whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G06700.1:2 AT1G06700.3:2 AT1G06700.2:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.292896529 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2053907-2053788(-) |
Potential amino acid sequence |
MVSRLKHENLIQLLGFCVDGNLRVLAYEFATMGSLHDILHANHKNSKPAPVAKHEVKKEALPIE VPPLSLDEVKEKTENFGSKALIGEGSYGRVYYATLNDGVAVALKKLDVAPEAETDTEFLSQVSM VSRLKHENLIQLLGFCVDGNLRVLAYEFATMGSLHDILHANHKNSKPAPVAKHEVKKEALPIEV PPLSLDEVKEKTENFGSKALIGEGSYGRVYYATLNDGVAVALKKLDVAPEAETDTEFLSQVSMV SRLKHENLIQLLGFCVDGNLRVLAYEFATMGSLHDILHANHKNSKPAPVAKHEVKKEALPIEVP PLSLDEVKEKTENFGSKALIGEGSYGRVYYATLNDGVAVALKKLDVAPEAETDTEFLSQVSMVS RLKHENLIQLLGFCVDGNLRVLAYEFATMGSLHDILH(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |