Detail information of AT3G55610_circ_g.4


General Information
CircRNA Name AT3G55610_circ_g.4
ID in PlantcircBase ath_circ_027688
Alias At_ciR4513
Organism Arabidpsis thaliana
Position chr3: 20624836-20628467  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT3G55610
Parent gene annotation Delta-1-pyrroline-5-carboxylate synthase
Parent gene strand -
Alternative splicing AT3G55440_circ_g.2 AT3G55440_circ_g.3 AT3G55440_circ_g.4 AT3G55440_circ_g.5 AT3G55440_circ_g.6 AT3G55440_circ_g.7 AT3G55440_circ_g.8 AT3G55440_circ_g.9 AT3G55440_circ_g.10 AT3G55440_circ_g.11 AT3G55440_circ_g.12 AT3G55440_circ_g.13 AT3G55440_circ_g.14 AT3G55440_circ_g.15 3_circ_ag.16 AT3G55440_circ_g.17 AT3G55440_circ_g.18 AT3G55440_circ_g.19 AT3G55450_circ_g.1 AT3G55450_circ_g.2 AT3G55450_circ_g.3 AT3G55460_circ_g.1 AT3G55460_circ_g.2 AT3G55460_circ_g.3 AT3G55460_circ_g.4 AT3G55460_circ_g.5 AT3G55460_circ_g.6 AT3G55460_circ_g.7 AT3G55470_circ_g.1 AT3G55470_circ_g.2 AT3G55480_circ_g.1 AT3G55480_circ_g.2 AT3G55480_circ_g.3 AT3G55480_circ_g.4 ENSRNA049493723_circ_g.1 AT3G55490_circ_g.1 AT3G55510_circ_g.1 AT3G55510_circ_g.2 AT3G55530_circ_g.1 AT3G55530_circ_g.2 AT3G55530_circ_g.3 AT3G55580_circ_g.1 AT3G55580_circ_g.2 AT3G55600_circ_g.1 AT3G55610_circ_g.1 AT3G55610_circ_g.2 AT3G55610_circ_g.3 AT3G55610_circ_g.5 AT3G55610_circ_g.6 AT3G55610_circ_g.7 AT3G55610_circ_g.8 AT3G55610_circ_g.9 AT3G55610_circ_g.10 AT3G55610_circ_g.11 AT3G55610_circ_g.12 AT3G55610_circ_g.13 AT3G55610_circ_g.14 AT3G55620_circ_g.1 AT3G55620_circ_g.2 AT3G55620_circ_g.3 AT3G55630_circ_g.1 AT3G55630_circ_g.2 AT3G55630_circ_g.3 AT3G55630_circ_g.4 AT3G55630_circ_g.5 AT3G55630_circ_g.6 AT3G55630_circ_g.7 AT3G55630_circ_g.8 AT3G55630_circ_g.9 AT3G55630_circ_g.10 AT3G55630_circ_g.11 AT3G55630_circ_g.12 AT3G55630_circ_g.13 AT3G55630_circ_g.14 AT3G55640_circ_g.1 AT3G55640_circ_g.2 AT3G55660_circ_g.1 AT3G55660_circ_g.2 AT3G55660_circ_g.3
Support reads 3
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G55610.2:14
AT3G55610.1:15
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTGACTAATTGTCTGTATCGAAGCCTTTGTCGACCAAGACCAACGGCACCAGATGACACCAA
AATGACCTCAAATCCATCTGAGTTTAACTCCGCAAGctgtccacttggcggaggaatatttctg
ctacttcactatcttccgtcactatgcaatcagtgtgtgcactgctctcataagataagacaaa
ggagtgac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTCCACTTGGCGGAGGAATATTTCTGCTACTTCACTATCTTCCGTCACTATGCAATCAGTGT
GTGCACTGCTCTCATAAGATAAGACAAAGGAGTGACCACACTTTCAGCACATGCATGGAATACA
GAGCGGTAGGTCCTTTGAAAAATTTGAAATCAGCAGTAATTTTACCTTCCATGTTGGTGAATAT
GATCTATAGCACCATATACGTCTTCTACAATTTCAACGGTGCAGGCCTTGGAACTGTACTCGTG
GTGAAATGATTTTGTTTCCGGAATATTCAGTTTTGCACTTGCTCTTGGCCCACCATACAAAGTG
ACGCCTGCAATTTGACACGTACACTTCAGACAAGTCTCTTTGAAAACGGTCAACAAACAAAACA
CTATCTTAATTTCAGTGTTTATGGTTTGAAATACTCTAGTTTAGTATTAAATATAAAACAACAG
TTGTAAGGAAATCCAGATTGGAAGATAGATCCAAATAATAAAAAAAAAGAATTATTTTCCCAAG
CTACTATACTCACCTTTGGTTTGCAGAACATAAATAAGATCATCGAGAAAACCATTCTGCTCCA
AATCTTTATGTACAAGAAGGGTTTCCTGTTAGGACCAAATAAAAAGAGAAGGTGAAGTGAGACA
AAAAGTACTAAGTGAGAACCAAAAACGAAATCACTTCGCATAAGTGAACAGTAGTGAAAGAGAC
AAGAATCTCTAACCATCGCATTACAGGCTGCTGGATAGTCCAACTTTGCATCGGAAACAATGCG
CTTTGCCATGTCCAGTTTACCAGACTTATCAACATATACATGACAGATTCCATCTGGAAACACC
CAAAAAATAAGCCATGTTCTCTCTAGGCCAATCCAACTTAAGAACTTAATGGAACTGAACTTAT
AAACATACCAGCATGGCCTAGCACTGGGATTTTCGTCGAGTTTTTTATTTGAGAAACAAGCTTG
TTGCTGCCTCTTGGGATCACAAGATCAATAACGTCATCAAGCTGTACCAAAAATGTAAATGGTG
GGTTCCAGTATAAGTGAAAAAAGCTAATCACTTCTGGGGACTTGCCATTCATATGTATCTATCT
GCTTACCTTGAGCAAATCAGGAATCTCCTCTCTTGAGGTCACAAGTCCTATGAGTTTACCTCCA
ACAGTCTCCGGAATTGCATCAGTGATCACCTTTAATTTTCCCATGTATTTCAAAAATTAGCCAG
ACGAATTTTGGGAAGCAAGCAAATGACTAGATTGAAGTTTACACCAATCTATGAAAAATGAGAT
CGATGTACCTTGTGTAAGATAGCATTTGATCGACGAGCCTCCTTTCCACCCTTCAGCAGAAGAC
CATTTCCACTCCGGATTGCAAGCGAAGCTATCTGTTTTATTTATTGATAGAGCATGGTGTTCAG
CGATCAGAACTCACATCTAAGAGTATAAAGGACAATGACACATGACATACCTGAACAAGTGCAT
CAGGCCGGGATTCAAAAACAATCAGAAGAACACCTATTGGTGATGAGGTCTTCTCTAAAATAAG
ATCATCTGCAACCTGTTACATTATAAATGTCAAGGATAATATGAATTAGACAAAAAATGTCATA
TTAAGAGGAGGAGGTTTTACATCATATGAGGATATCTCTTCCCTGTATTTAAAATCTAGTTTGG
AATTTGGTGGTAAAGTATTGTCGTCAGATTACCTGAGTTTTCTTTAATACACGGCCTATTGGAT
CTTCCATTTCGGCTAGCTGGCGAACGGAAGCTGCAAGGCTTGAGATCTATCAAGCACAAAACAG
TGTAAAAAGAGAAATAAATACACCATATGAAGACAAAAAAAATGGTACAATAAATTAAATCACG
CAGTGAATATACTGTCTTACCTTCCCAGGCTTCATAACTAAGCGAGCTACCAAAGACTCTTCAT
ATCCAGCTTCTTGTGCTGCAGCAACATCTAAATCATTCTCAGCTTTAATTGTTTTCTCATTTAC
TTCAAGGGCATTGGCAATGTCGTGTAGAATTTGTTTCCTATCTTCTGAAGATAAGGCCTGTAAG
CAAATTGCATACAAGTTGAGTACACTGGCATAACAAGAAACAATATCTGAATTTGAGTTCACTT
GCAATCAAAGCCTTAACATTACCTGAAGCTTTCTTGAGCTTTCCCTTGCAGCAACTGCCATGTC
ACGAGAAGTAGTATCTACGACCGGAGCCCATAAATGAGCATCTTGATGGAACAGGGTACCAACA
CGCAGTCCTCTAAGGACTTTACTTATATTCTCAGCTGCATATCCACTTCATGAAAATAGCAAAA
AAAAAAAAAAATCACTCTTCCATCCAACATTATATGTTGTTAGCTTATTGATCAGGGCCTTCTA
TATTCTGAAATTTCAAGGGAAGACAGGATTCTAAATATTCAGGGAACAAGCTACGTGGAGAGAA
AAAGATGTGGTAAAGTAGAGAACTTCAACAGTGCTACAATCTTGAGCTTACAATATCGCTCATT
TTTTTAATTCCCATACTTTACATTGCAGCAGAGGAAGAAAAAGAATTATCTGTTTCAAAGTTGG
AGACTAAATTTTTTACAACATAGAGTTATGCAGTATAATTACAGATTATGAGTACGGAAGGGCC
TTTTACCTGGTTATGATAACAGGAACGCCACCATAAGCTGCATTAACAGCAGCTTTAACTTTTG
CAGTCATACCCCCTCGTCCTAATTTGGACTTTTCGCCAAAAGTAATCTCGTCCTGGTGTTTTTC
TTTAATGAATGTGTGTATTAATTTTGAGGTAGAATCACTTGGAGGGCCAGTGTAAAGGCCCTCA
ACATCACTTAGAAGAATCAAAAGATCAGCTTTCAGCTCTAGCGACAGAAGAGCGGCTAAGCTGT
CATTATCCCAAAATATACCAGTAGAATCCTGTATACGTTGAAGTACAGTGAAGCTGTAAGTTAG
TAGACTAAAAGATTCAGAGGAACTAGGAAATTACTTGATTCTAGTTTCATCATGTACAGTCAAT
AAGTATCGCTTTACAATTTCTCACATCTCCAAAGTTAGTAGAACTCTATGTCAAAGAGCAAAAG
AAAGGCAATCAACAAACCTTGTAGGGGGCTCTGCGAGTGCTTATAGCATCATTCTCATTGAAAA
CTGGAATAACCCTCATCCTCAGCATCGCTTTGACAGTTTCACTAAGTTGCTTCCTGAAATCCTT
ATCTCTAAAACTGCTATCGGTCACAAGCATTTGAGCAACCGTCACATCCAACTACCACACAAAA
AGACGAAAAAAGCAACACATCAATATTTGAAATGCTTGCCAATAATCAAGACACAACCAAAAAA
AAAAAGCATCGCATCACCTGGTCAAACATAGTCTCATAGTAAGCCATGAGACTGCTCTGCCCAA
CACCAGCACAAGCCTTCCCATCAAGTTCCATTTGTGGCTTCTGTAAATCTGCAAAACTGAAAAT
CCGAAGAGAACAAAAATCAGCACAGAAACACTAAAAACAAAAAAAACTTTAAACTTGTTCCAAT
AATATAACCTGCTGTTGACTAATTGTCTGTATCGAAGCCTTTGTCGACCAAGACCAACGGCACC
AGATGACACCAAAATGACCTCAAATCCATCTGAGTTTAACTCCGCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.152074211
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015