Plant Circular RNA Database

Detail information of Os03g0348200_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os03g0348200_circ_g.2
					
						ID in PlantcircBase
						osa_circ_019794
					
						Alias
						Os03circ15245
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 13066756-13067725  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, SMALT, Segemehl
					
						Parent gene
						
							Os03g0348200						
					
						Parent gene annotation
						
							Terpene synthase-like domain containing protein. (Os03t0348200-0
0)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os03g0348200_circ_g.1 Os03g0348200_circ_g.3 						
					
						Support reads
						3/2
					
						Tissues
						leaf/shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0348200-00:3

General Information
CircRNA Name	Os03g0348200_circ_g.2
ID in PlantcircBase	osa_circ_019794
Alias	Os03circ15245
Organism	Oryza sativa
Position	chr3: 13066756-13067725 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, SMALT, Segemehl
Parent gene	Os03g0348200
Parent gene annotation	Terpene synthase-like domain containing protein. (Os03t0348200-0 0)
Parent gene strand	-
Alternative splicing	Os03g0348200_circ_g.1 Os03g0348200_circ_g.3
Support reads	3/2
Tissues	leaf/shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0348200-00:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGAAGGTTGGCAGCATTGTATAAGCTTAAGAGACCTTTTGGGTCATTTGTTATGTCAATGATAA
AGCTTCCATCTCTGTGTTTGAATTTGTTGAAAACATcactttcctattgtaagcattgcggtgc
ctaatatgtggttccaattcattctcgaactccacgaaattgctcatcaccttgagaaagaatt
tcttcaga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 204
Transcript exons: 13066756-13066846,13067613-13067725
CACTTTCCTATTGTAAGCATTGCGGTGCCTAATATGTGGTTCCAATTCATTCTCGAACTCCACG
AAATTGCTCATCACCTTGAGAAAGAATCTCGTTGTGGGTGAGAAGGTTGGCAGCATTGTATAAG
CTTAAGAGACCTTTTGGGTCATTTGTTATGTCAATGATAAAGCTTCCATCTCTGTGTTTGAATT
TGTTGAAAACAT
Transcript length: 311
Transcript exons: 13066756-13066875,13067062-13067162,13067172-13067216,13
067681-13067725
CACTTTCCTATTGTAAGCATTGCGGTGCCTAATATGTGGTTCCAATTCATTCTCGAACTCCACG
AAATTGCTCATCACCTTGAGAAAGAATTTCTTCAGATAATCTGGTAGAACAGAAATTAACAATG
ATGTTAACATGAAAAACTTGGCAAGGATCATCCGGGCACGTGTGTACTCCTCCTCAAAGTACAT
AGAATATGACCAAAAGTAGCATTCAACAATTATGTAGTCTAGTCCTATGTCATTTGAAAGATCC
TCCCACCACCCAATGATAAAGCTTCCATCTCTGTGTTTGAATTTGTTGAAAACAT
Transcript length: 315
Transcript exons: 13066756-13066886,13067542-13067725
CACTTTCCTATTGTAAGCATTGCGGTGCCTAATATGTGGTTCCAATTCATTCTCGAACTCCACG
AAATTGCTCATCACCTTGAGAAAGAATTTCTTCAGATAATCTGGTAGAACAGAAATATCACTCT
CATGGGGACTTCAGGTTACTTTTCATTAACTCCAAATGATGCCTTGAAAATAAGATAGCTTCCT
GGAGGGCTTCCTCGTTGTGGGTGAGAAGGTTGGCAGCATTGTATAAGCTTAAGAGACCTTTTGG
GTCATTTGTTATGTCAATGATAAAGCTTCCATCTCTGTGTTTGAATTTGTTGAAAACAT
Transcript length: 731
Transcript exons: 13066756-13066891,13066997-13067215,13067350-13067725
CACTTTCCTATTGTAAGCATTGCGGTGCCTAATATGTGGTTCCAATTCATTCTCGAACTCCACG
AAATTGCTCATCACCTTGAGAAAGAATTTCTTCAGATAATCTGGTAGAACAGAAATATCACTCT
CATCCCAGCTTTGTATGGCCACATTGAGATTTCGACATTCCTCCAAAGTAGCATGCGTATCATA
AGTGTCATCTAACAATGATGTTAACATGAAAAACTTGGCAAGGATCATCCGGGCACGTGTGTAC
TCCTCCTCAAAGTACATAGAATATGACCAAAAGTAGCATTCAACAATGCGATCCCTTATGTAGT
CTAGTCCTATGTCATTTGAAAGATCCTCCCACCACTGAGTAATTGTCTTGAGCTCCCTTTGGTG
AATATGTTGAAGAAGGTTAAAGTCTAGCTTGGCAAGCTCCAGTATTGAGGGGTTGTATGTTTGC
TCGTGTACATTGTACTCTAATATATAAGATAGGGCCTCAACCCTCTTCAAGTTTCTGGACAATG
GTATCTGAAGAGCACGTGAAACTTGCTCAGCTAATGGGGACTTCAGGTTACTTTTCATTAACTC
CAAATGATGCCTTGAAAATAAGATAGCTTCCTGGAGGGCTTCCTCGTTGTGGGTGAGAAGGTTG
GCAGCATTGTATAAGCTTAAGAGACCTTTTGGGTCATTTGTTATGTCAATGATAAAGCTTCCAT
CTCTGTGTTTGAATTTGTTGAAAACAT
						
					

						Genomic sequence
						
							CACTTTCCTATTGTAAGCATTGCGGTGCCTAATATGTGGTTCCAATTCATTCTCGAACTCCACG
AAATTGCTCATCACCTTGAGAAAGAATTTCTTCAGATAATCTGGTAGAACAGAAATATCACTCT
CATCCCAGCTGCATGGTCATTTTTTGCACGAATTAGTTAGTCAAATTTCACCTCATTGATTATA
CCCATGTTTTGTTCTCTAGATGAAAGTTAATCAAAAATAATAGTATAACCTTTGTATGGCCACA
TTGAGATTTCGACATTCCTCCAAAGTAGCATGCGTATCATAAGTGTCATCTAACAATGATGTTA
ACATGAAAAACTTGGCAAGGATCATCCGGGCACGTGTGTACTCCTCCTCAAAGTACATAGAATA
TGACCAAAAGTAGCATTCAACAATGCGATCCCTTATGTAGTCTAGTCCTATGTCATTTGAAAGA
TCCTCCCACCACCTGAAATTAAGAAAGGATATGTGTATGTTGTTGTAAGTGATAGTAAAAAAGT
TCTAGTCATTGTCAAATTCCATTTATATTAGGGCTCATAGATATTGAGTTTGATATATTTAGAG
CATGCTCCGAAAAATTACTGAGTAATTGTCTTGAGCTCCCTTTGGTGAATATGTTGAAGAAGGT
TAAAGTCTAGCTTGGCAAGCTCCAGTATTGAGGGGTTGTATGTTTGCTCGTGTACATTGTACTC
TAATATATAAGATAGGGCCTCAACCCTCTTCAAGTTTCTGGACAATGGTATCTGAAGAGCACGT
GAAACTTGCTCAGCTAATGGGGACTTCAGGTTACTTTTCATTAACTCCAAATGATGCCTTGAAA
ATAAGATAGCTTCCTGGAGGGCTTCCTCGTTGTGGGTGAGAAGGTTGGCAGCATTGTATAAGCT
TAAGAGACCTTTTGGGTCATTTGTTATGTCAATGATAAAGCTTCCATCTCTGTGTTTGAATTTG
TTGAAAACAT
						
					

			
		

Sequences
Splice junction sequence	AGAAGGTTGGCAGCATTGTATAAGCTTAAGAGACCTTTTGGGTCATTTGTTATGTCAATGATAA AGCTTCCATCTCTGTGTTTGAATTTGTTGAAAACATcactttcctattgtaagcattgcggtgc ctaatatgtggttccaattcattctcgaactccacgaaattgctcatcaccttgagaaagaatt tcttcaga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 204 Transcript exons: 13066756-13066846,13067613-13067725 CACTTTCCTATTGTAAGCATTGCGGTGCCTAATATGTGGTTCCAATTCATTCTCGAACTCCACG AAATTGCTCATCACCTTGAGAAAGAATCTCGTTGTGGGTGAGAAGGTTGGCAGCATTGTATAAG CTTAAGAGACCTTTTGGGTCATTTGTTATGTCAATGATAAAGCTTCCATCTCTGTGTTTGAATT TGTTGAAAACAT Transcript length: 311 Transcript exons: 13066756-13066875,13067062-13067162,13067172-13067216,13 067681-13067725 CACTTTCCTATTGTAAGCATTGCGGTGCCTAATATGTGGTTCCAATTCATTCTCGAACTCCACG AAATTGCTCATCACCTTGAGAAAGAATTTCTTCAGATAATCTGGTAGAACAGAAATTAACAATG ATGTTAACATGAAAAACTTGGCAAGGATCATCCGGGCACGTGTGTACTCCTCCTCAAAGTACAT AGAATATGACCAAAAGTAGCATTCAACAATTATGTAGTCTAGTCCTATGTCATTTGAAAGATCC TCCCACCACCCAATGATAAAGCTTCCATCTCTGTGTTTGAATTTGTTGAAAACAT Transcript length: 315 Transcript exons: 13066756-13066886,13067542-13067725 CACTTTCCTATTGTAAGCATTGCGGTGCCTAATATGTGGTTCCAATTCATTCTCGAACTCCACG AAATTGCTCATCACCTTGAGAAAGAATTTCTTCAGATAATCTGGTAGAACAGAAATATCACTCT CATGGGGACTTCAGGTTACTTTTCATTAACTCCAAATGATGCCTTGAAAATAAGATAGCTTCCT GGAGGGCTTCCTCGTTGTGGGTGAGAAGGTTGGCAGCATTGTATAAGCTTAAGAGACCTTTTGG GTCATTTGTTATGTCAATGATAAAGCTTCCATCTCTGTGTTTGAATTTGTTGAAAACAT Transcript length: 731 Transcript exons: 13066756-13066891,13066997-13067215,13067350-13067725 CACTTTCCTATTGTAAGCATTGCGGTGCCTAATATGTGGTTCCAATTCATTCTCGAACTCCACG AAATTGCTCATCACCTTGAGAAAGAATTTCTTCAGATAATCTGGTAGAACAGAAATATCACTCT CATCCCAGCTTTGTATGGCCACATTGAGATTTCGACATTCCTCCAAAGTAGCATGCGTATCATA AGTGTCATCTAACAATGATGTTAACATGAAAAACTTGGCAAGGATCATCCGGGCACGTGTGTAC TCCTCCTCAAAGTACATAGAATATGACCAAAAGTAGCATTCAACAATGCGATCCCTTATGTAGT CTAGTCCTATGTCATTTGAAAGATCCTCCCACCACTGAGTAATTGTCTTGAGCTCCCTTTGGTG AATATGTTGAAGAAGGTTAAAGTCTAGCTTGGCAAGCTCCAGTATTGAGGGGTTGTATGTTTGC TCGTGTACATTGTACTCTAATATATAAGATAGGGCCTCAACCCTCTTCAAGTTTCTGGACAATG GTATCTGAAGAGCACGTGAAACTTGCTCAGCTAATGGGGACTTCAGGTTACTTTTCATTAACTC CAAATGATGCCTTGAAAATAAGATAGCTTCCTGGAGGGCTTCCTCGTTGTGGGTGAGAAGGTTG GCAGCATTGTATAAGCTTAAGAGACCTTTTGGGTCATTTGTTATGTCAATGATAAAGCTTCCAT CTCTGTGTTTGAATTTGTTGAAAACAT
Genomic sequence	CACTTTCCTATTGTAAGCATTGCGGTGCCTAATATGTGGTTCCAATTCATTCTCGAACTCCACG AAATTGCTCATCACCTTGAGAAAGAATTTCTTCAGATAATCTGGTAGAACAGAAATATCACTCT CATCCCAGCTGCATGGTCATTTTTTGCACGAATTAGTTAGTCAAATTTCACCTCATTGATTATA CCCATGTTTTGTTCTCTAGATGAAAGTTAATCAAAAATAATAGTATAACCTTTGTATGGCCACA TTGAGATTTCGACATTCCTCCAAAGTAGCATGCGTATCATAAGTGTCATCTAACAATGATGTTA ACATGAAAAACTTGGCAAGGATCATCCGGGCACGTGTGTACTCCTCCTCAAAGTACATAGAATA TGACCAAAAGTAGCATTCAACAATGCGATCCCTTATGTAGTCTAGTCCTATGTCATTTGAAAGA TCCTCCCACCACCTGAAATTAAGAAAGGATATGTGTATGTTGTTGTAAGTGATAGTAAAAAAGT TCTAGTCATTGTCAAATTCCATTTATATTAGGGCTCATAGATATTGAGTTTGATATATTTAGAG CATGCTCCGAAAAATTACTGAGTAATTGTCTTGAGCTCCCTTTGGTGAATATGTTGAAGAAGGT TAAAGTCTAGCTTGGCAAGCTCCAGTATTGAGGGGTTGTATGTTTGCTCGTGTACATTGTACTC TAATATATAAGATAGGGCCTCAACCCTCTTCAAGTTTCTGGACAATGGTATCTGAAGAGCACGT GAAACTTGCTCAGCTAATGGGGACTTCAGGTTACTTTTCATTAACTCCAAATGATGCCTTGAAA ATAAGATAGCTTCCTGGAGGGCTTCCTCGTTGTGGGTGAGAAGGTTGGCAGCATTGTATAAGCT TAAGAGACCTTTTGGGTCATTTGTTATGTCAATGATAAAGCTTCCATCTCTGTGTTTGAATTTG TTGAAAACAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_004820* 						
					
						PMCS
						0.236878522

Conservation Information
Conserved circRNAs	osi_circ_004820*
PMCS	0.236878522

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							13067678-13066784(+)
13067566-13067677(-)
						
						Potential amino acid sequence
						
							MSMIKLPSLCLNLLKTSLSYCKHCGA*(+)
MKSNLKSPLAEQVSRALQIPLSRNLKRVEALSYILEYNVHEQTYNPSILELAKLDFNLLQHIHQ
RELKTITQWWEDLSNDIGLDYIRDRIVECYFWSYSMYFEEEYTRARMILAKFFMLTSLLDDTYD
THATLEECRNLNVAIQSWDESDISVLPDYLKKFFLKVMSNFVEFENELEPHIRHRNAYNRKVMF
STNSNTEMEALSLT*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	13067678-13066784(+) 13067566-13067677(-)
Potential amino acid sequence	MSMIKLPSLCLNLLKTSLSYCKHCGA(+) MKSNLKSPLAEQVSRALQIPLSRNLKRVEALSYILEYNVHEQTYNPSILELAKLDFNLLQHIHQ RELKTITQWWEDLSNDIGLDYIRDRIVECYFWSYSMYFEEEYTRARMILAKFFMLTSLLDDTYD THATLEECRNLNVAIQSWDESDISVLPDYLKKFFLKVMSNFVEFENELEPHIRHRNAYNRKVMF STNSNTEMEALSLT(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Chu et al., 2017

circRNA

Detail information of Os03g0348200_circ_g.2

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