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circRNA ID
AT1G01715_circ_g.1
Alias
ath_circ_000116
Organism
Arabidpsis thaliana
Position
chr1: 266725-267258  JBrowse»
Reference genome
TAIR10.38
Type  
i-circRNA
Identification method
CIRCexplorer
Parent gene
Parent gene annotation
protein_coding
Parent gene strand
+
Alternative splicing
NA
Splice junction sequence  
GATACCATGAGATAAGTGGCCACATTAGGTGACACTAAGATTTCATAGCATTGTAATATACACA
AGTCTCTAGTGAACTGCTGTTGTGATAACCAACTCAgttcgtacgtttctttgcttatatttag
ttagataccttccttctcctttggtttcagctggaattttagtctctttttctttctagatgat
gtaataat
Support reads
8
Tissues
seedlings
Exon boundary  
No-No
Splicing signals  
TC-AG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
GTTCGTACGTTTCTTTGCTTATATTTAGTTAGATACCTTCCTTCTCCTTTGGTTTCAGCTGGAA
TTTTAGTCTCTTTTTCTTTCTAGATGATGTAATAATAGATTGATCCTCTACATTATTCGTGGAT
CATTCTTGTGAAGACCAAGTTGTTTAGCAGCAGCAGACTTGCCTTTTGATTGTGATGTCGTTTT
TTGCATTTAGGTTTGTGTCATGCCATGCGTGTAGAATATTGTGATACTTGCTACTATACCCTCT
GGATGATTATGTTCATGAGTTATTACGCTTAATTCTGAGGTGATGATACATATACAAGGCTTTT
CCATTACAATAAATCATGTATTTTTGTGGCTTAGAATCGACAAGCATGAGACTATGTGATGATA
TGTTTAGCTAAGCTGAGAGAAAATGATTGTTTAGCCAATTTTTGTTTACAGATACCATGAGATA
AGTGGCCACATTAGGTGACACTAAGATTTCATAGCATTGTAATATACACAAGTCTCTAGTGAAC
TGCTGTTGTGATAACCAACTCA
Number of exons covered
0
Conserved circRNAs
NA
Coding potential
N
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Pan et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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