Plant Circular RNA Database

Detail information of Os08g0266700_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os08g0266700_circ_g.1
					
						ID in PlantcircBase
						osa_circ_036550
					
						Alias
						Os_ciR11332
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 10162557-10163979  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os08g0266700						
					
						Parent gene annotation
						
							Rad21/Rec8 like protein, C-terminal domain containing protein. (
Os08t0266700-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0266700-01:3

General Information
CircRNA Name	Os08g0266700_circ_g.1
ID in PlantcircBase	osa_circ_036550
Alias	Os_ciR11332
Organism	Oryza sativa
Position	chr8: 10162557-10163979 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	find_circ
Parent gene	Os08g0266700
Parent gene annotation	Rad21/Rec8 like protein, C-terminal domain containing protein. ( Os08t0266700-01)
Parent gene strand	+
Alternative splicing	NA
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0266700-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GTCAGCAAGAGGAGGAAACTGCCTCAAGCAGCGGTGGATGTGTGGAAATTCAACAGGATTCGCC
AAAAGGATGGTTTCTTGCTTGATCCTTTGGTCCATGgagattgcctccatttcacatcgatttt
gggccaagtgacaatatggatgaggaaatttccgtagatccttcccaaggcaacaactcggagg
cagtgaac

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 734
Transcript exons: 10162557-10162948,10163154-10163352,10163837-10163979
GAGATTGCCTCCATTTCACATCGATTTTGGGCCAAGTGACAATATGGATGAGGAAATTTCCGTA
GATCCTTCCCAAGGCAACAACTCGGAGGCAGTGAACACCAGTAACATAAATCAGGCAGATAAAG
CACCAGATTTACCTGAAATAATGCGTGAAGCACCATTTGAGGGCCCTGAACTTAACTTGCCAGA
TATTGATGAGGTAAACAATGATCCCATGGATGTGACTGAGGAATCTTCACCATTTGTGTCCAAG
AATATCACCCCTCCGGCACTGGAACGAACTATATCCCCTGGTCAAGGTGGATTATCTGGGACAT
CCATTCCCAATGCACGAGGAAGTACAAGCACCACATATGACAATATAGAAGATGTTATACCAAT
GGATATTGGAATGCCTGATTTTAGGATTGAACCATCTCCACCTCGAGTACAAGATGAGATGAAT
GCACAACCAGTACAAGGTGAGATAAACGCACAACCAGTACAAGATGAGATGAACGCACAACCAG
TACAAGATGAGATGAATGCACACCCAGCACAAGATAAGAGGAGAATTAGATATGACAATGAAAT
AGTGTTCTCCAATGCTTATATGAAGAGACAAATTGATGGCGGTGAACTACATCGTCTGGTCAGC
AAGAGGAGGAAACTGCCTCAAGCAGCGGTGGATGTGTGGAAATTCAACAGGATTCGCCAAAAGG
ATGGTTTCTTGCTTGATCCTTTGGTCCATG
						
					

						Genomic sequence
						
							GAGATTGCCTCCATTTCACATCGATTTTGGGCCAAGTGACAATATGGATGAGGAAATTTCCGTA
GATCCTTCCCAAGGCAACAACTCGGAGGCAGTGAACACCAGTAACATAAATCAGGCAGATAAAG
CACCAGATTTACCTGAAATAATGCGTGAAGCACCATTTGAGGGCCCTGAACTTAACTTGCCAGA
TATTGATGAGGTAAACAATGATCCCATGGATGTGACTGAGGAATCTTCACCATTTGTGTCCAAG
AATATCACCCCTCCGGCACTGGAACGAACTATATCCCCTGGTCAAGGTGGATTATCTGGGACAT
CCATTCCCAATGCACGAGGAAGTACAAGCACCACATATGACAATATAGAAGATGTTATACCAAT
GGATATTGGTTAGTATTTTGCTTGTTGACTCATCTTGTTCTTTCCAGTTTTGTTTTCTGCCTTC
ATTTTTTCATAAGACCTAATAGAAATAAGACTACATTGCAATTCCACCAGCATTACTTATGTGG
GATGCTAGAATGTTGTGTAAAATGTACTTTCCCTTGATGTTAAACATGTCTTCTCATCCAAGTT
CTTTTCCTTCTGTGATTTTAGGAATGCCTGATTTTAGGATTGAACCATCTCCACCTCGAGTACA
AGATGAGATGAATGCACAACCAGTACAAGGTGAGATAAACGCACAACCAGTACAAGATGAGATG
AACGCACAACCAGTACAAGATGAGATGAATGCACACCCAGCACAAGATAAGAGGAGAATTAGAT
ATGACAATGAAATAGTGTTCTCCAATGCGTAAGTTCGACTTTACAAATTATCTTCTTAAGCAAA
GTTCATTGGTGGAAATAACCTCAAATTAAATATTATATGTTTACCAGGACTTCGATGAATTTTT
GAAATTCATATTGTACTATGTCTTGCCTGGGCGTTTTGTTTAAAATCTACCAAATGACATCTTC
ATTTCTACCATGTCCTGTCTCCTCTGATCCTATTACTCTGTCCCCTCACCTACACCACCCTTCG
AATATTGTTTTTCTAAACAGCTTATCTATAAATAGAATAATTCTATGTGTGCTGTTATCAACCG
GTAATTAACTCGTCTAATAATTTTGATATATTTGTATGGGATTTGTTCTGTTCAAAAATACAAG
TCAGGCTATGAACTTTTTACCATCGTAGTGCTAGGTGTGATGGGGATTAATTGCAACAACAGTA
TGATATCTGGTGGTACTATACTGTATTAGTTACAAATGATAAGACCTCATACTCTCTTGCACAG
TTATATGAAGAGACAAATTGATGGCGGTGAACTACATCGTCTGGTCAGCAAGAGGAGGAAACTG
CCTCAAGCAGCGGTGGATGTGTGGAAATTCAACAGGATTCGCCAAAAGGATGGTTTCTTGCTTG
ATCCTTTGGTCCATG
						
					

			
		

Sequences
Splice junction sequence	GTCAGCAAGAGGAGGAAACTGCCTCAAGCAGCGGTGGATGTGTGGAAATTCAACAGGATTCGCC AAAAGGATGGTTTCTTGCTTGATCCTTTGGTCCATGgagattgcctccatttcacatcgatttt gggccaagtgacaatatggatgaggaaatttccgtagatccttcccaaggcaacaactcggagg cagtgaac
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 734 Transcript exons: 10162557-10162948,10163154-10163352,10163837-10163979 GAGATTGCCTCCATTTCACATCGATTTTGGGCCAAGTGACAATATGGATGAGGAAATTTCCGTA GATCCTTCCCAAGGCAACAACTCGGAGGCAGTGAACACCAGTAACATAAATCAGGCAGATAAAG CACCAGATTTACCTGAAATAATGCGTGAAGCACCATTTGAGGGCCCTGAACTTAACTTGCCAGA TATTGATGAGGTAAACAATGATCCCATGGATGTGACTGAGGAATCTTCACCATTTGTGTCCAAG AATATCACCCCTCCGGCACTGGAACGAACTATATCCCCTGGTCAAGGTGGATTATCTGGGACAT CCATTCCCAATGCACGAGGAAGTACAAGCACCACATATGACAATATAGAAGATGTTATACCAAT GGATATTGGAATGCCTGATTTTAGGATTGAACCATCTCCACCTCGAGTACAAGATGAGATGAAT GCACAACCAGTACAAGGTGAGATAAACGCACAACCAGTACAAGATGAGATGAACGCACAACCAG TACAAGATGAGATGAATGCACACCCAGCACAAGATAAGAGGAGAATTAGATATGACAATGAAAT AGTGTTCTCCAATGCTTATATGAAGAGACAAATTGATGGCGGTGAACTACATCGTCTGGTCAGC AAGAGGAGGAAACTGCCTCAAGCAGCGGTGGATGTGTGGAAATTCAACAGGATTCGCCAAAAGG ATGGTTTCTTGCTTGATCCTTTGGTCCATG
Genomic sequence	GAGATTGCCTCCATTTCACATCGATTTTGGGCCAAGTGACAATATGGATGAGGAAATTTCCGTA GATCCTTCCCAAGGCAACAACTCGGAGGCAGTGAACACCAGTAACATAAATCAGGCAGATAAAG CACCAGATTTACCTGAAATAATGCGTGAAGCACCATTTGAGGGCCCTGAACTTAACTTGCCAGA TATTGATGAGGTAAACAATGATCCCATGGATGTGACTGAGGAATCTTCACCATTTGTGTCCAAG AATATCACCCCTCCGGCACTGGAACGAACTATATCCCCTGGTCAAGGTGGATTATCTGGGACAT CCATTCCCAATGCACGAGGAAGTACAAGCACCACATATGACAATATAGAAGATGTTATACCAAT GGATATTGGTTAGTATTTTGCTTGTTGACTCATCTTGTTCTTTCCAGTTTTGTTTTCTGCCTTC ATTTTTTCATAAGACCTAATAGAAATAAGACTACATTGCAATTCCACCAGCATTACTTATGTGG GATGCTAGAATGTTGTGTAAAATGTACTTTCCCTTGATGTTAAACATGTCTTCTCATCCAAGTT CTTTTCCTTCTGTGATTTTAGGAATGCCTGATTTTAGGATTGAACCATCTCCACCTCGAGTACA AGATGAGATGAATGCACAACCAGTACAAGGTGAGATAAACGCACAACCAGTACAAGATGAGATG AACGCACAACCAGTACAAGATGAGATGAATGCACACCCAGCACAAGATAAGAGGAGAATTAGAT ATGACAATGAAATAGTGTTCTCCAATGCGTAAGTTCGACTTTACAAATTATCTTCTTAAGCAAA GTTCATTGGTGGAAATAACCTCAAATTAAATATTATATGTTTACCAGGACTTCGATGAATTTTT GAAATTCATATTGTACTATGTCTTGCCTGGGCGTTTTGTTTAAAATCTACCAAATGACATCTTC ATTTCTACCATGTCCTGTCTCCTCTGATCCTATTACTCTGTCCCCTCACCTACACCACCCTTCG AATATTGTTTTTCTAAACAGCTTATCTATAAATAGAATAATTCTATGTGTGCTGTTATCAACCG GTAATTAACTCGTCTAATAATTTTGATATATTTGTATGGGATTTGTTCTGTTCAAAAATACAAG TCAGGCTATGAACTTTTTACCATCGTAGTGCTAGGTGTGATGGGGATTAATTGCAACAACAGTA TGATATCTGGTGGTACTATACTGTATTAGTTACAAATGATAAGACCTCATACTCTCTTGCACAG TTATATGAAGAGACAAATTGATGGCGGTGAACTACATCGTCTGGTCAGCAAGAGGAGGAAACTG CCTCAAGCAGCGGTGGATGTGTGGAAATTCAACAGGATTCGCCAAAAGGATGGTTTCTTGCTTG ATCCTTTGGTCCATG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.201135406

Conservation Information
Conserved circRNAs	NA
PMCS	0.201135406

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							10162601-10162618(+)
10163858-10162592(+)
10162722-10163870(-)
						
						Potential amino acid sequence
						
							MDEEISVDPSQGNNSEAVNTSNINQADKAPDLPEIMREAPFEGPELNLPDIDEVNNDPMDVTEE
SSPFVSKNITPPALERTISPGQGGLSGTSIPNARGSTSTTYDNIEDVIPMDIGMPDFRIEPSPP
RVQDEMNAQPVQGEINAQPVQDEMNAQPVQDEMNAHPAQDKRRIRYDNEIVFSNAYMKRQIDGG
ELHRLVSKRRKLPQAAVDVWKFNRIRQKDGFLLDPLVHGDCLHFTSILGQVTIWMRKFP*(+)
MAVNYIVWSARGGNCLKQRWMCGNSTGFAKRMVSCLILWSMEIASISHRFWAK*(+)
MVLHALFQVNLVLYLPDLCYWCSLPPSCCLGKDLRKFPHPYCHLAQNRCEMEAISMDQRIKQET
ILLANPVEFPHIHRCLRQFPPLADQTM*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	10162601-10162618(+) 10163858-10162592(+) 10162722-10163870(-)
Potential amino acid sequence	MDEEISVDPSQGNNSEAVNTSNINQADKAPDLPEIMREAPFEGPELNLPDIDEVNNDPMDVTEE SSPFVSKNITPPALERTISPGQGGLSGTSIPNARGSTSTTYDNIEDVIPMDIGMPDFRIEPSPP RVQDEMNAQPVQGEINAQPVQDEMNAQPVQDEMNAHPAQDKRRIRYDNEIVFSNAYMKRQIDGG ELHRLVSKRRKLPQAAVDVWKFNRIRQKDGFLLDPLVHGDCLHFTSILGQVTIWMRKFP(+) MAVNYIVWSARGGNCLKQRWMCGNSTGFAKRMVSCLILWSMEIASISHRFWAK(+) MVLHALFQVNLVLYLPDLCYWCSLPPSCCLGKDLRKFPHPYCHLAQNRCEMEAISMDQRIKQET ILLANPVEFPHIHRCLRQFPPLADQTM*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os08g0266700_circ_g.1

Address

Any questions?

Supported by