Detail information of BGIOSGA035035_circ_g.2


General Information
CircRNA Name BGIOSGA035035_circ_g.2
ID in PlantcircBase osi_circ_009416
Alias Chr11:6719041_6719864(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 5944381-5945204  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA035035
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA035035-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTGTTGAGCATGACGGGAAATATGTTTTCACAGATGTGGTAGAGAAGTTACTCTGCTATGAAT
ATCTACCCAATGGAAGCCTTGACAACTATATTTACGgggttgctgtagttgagtcaacctgttc
acacgcggtttgcttctcccatcaagaaaccacactgctcgtcttctccagctctcttcctcct
cgagacct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGTTGCTGTAGTTGAGTCAACCTGTTCACACGCGGTTTGCTTCTCCCATCAAGAAACCACACT
GCTCGTCTTCTCCAGCTCTCTTCCTCCTCGAGACCTCGACCTCGATTGATACACAAGAAGAAGA
TTCTGTACTTGGAGAGCCAACTGTTCTTCAGGTAATCAGGTTAGTGCCCCTGCGAACTGATCAG
TGCTCTTCTCACTGGGTTTCTTTGATGAACTTGTTCTTCTTTGCTGTTTTCTTTTGAAAGGGCT
TTTGTAATTCTTAGCAGTCACATATTTTTCTGTGTTGTTTCGCGTAGATTTTGGGTAATCAGAA
ATGAAGGGTGAATCCAGCACACAGAGAAAGACGAAGAACAAGTCACAGTATCCAAGTACTCTTC
CAAAGGATCCAACCTTAGTTTTTTTGAAAGATATCACAGAAAATTTCTCGAGTAAACGAGAAAT
TGGGCGCGGTGCATTTGGAGTGGTTTATAAGGTAGTACAATTCTACACATAGTTATCCAACATT
TCTCCACTTCACTGTAATAAGTTGACAGATCCATCTTTATATATGTTAAACAGGGTGTACTTGA
TAATGGGGAGGTGATTGCTGTGAAGAAGCTTGAGAGAACATCAGGAATTCATGCCAGAAGGTTT
CAGAACGAGGCAAACAACCTCCTCGAGTTGGAGCACAAGAATGTAGTGAAGTTGATTGGTTCTT
GCTGCCAAGCAGAAAGGCAAGTTGTTGAGCATGACGGGAAATATGTTTTCACAGATGTGGTAGA
GAAGTTACTCTGCTATGAATATCTACCCAATGGAAGCCTTGACAACTATATTTACG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021