Detail information of AT1G30545_circ_g.1


General Information
CircRNA Name AT1G30545_circ_g.1
ID in PlantcircBase ath_circ_005079
Alias 1:10820993-10821522
Organism Arabidpsis thaliana
Position chr1: 10820993-10821522  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G30545
Parent gene annotation S-adenosyl-L-methionine-dependent methyltransferase superfamily
protein
Parent gene strand -
Alternative splicing NA
Support reads 1/1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G30545.1:3
AT1G30545.2:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACAAAATCAACACGATTAGCAACTCCATAAACCATGGCATTGTTCATCGCCAATTCAACTTTC
ACCGGATCAATGTCAATAGCAACAACAGAAGAACATctcaagatttaacggaggcgacgagagc
caagctagttcttccacttgtgctaaatcaacatttcgcggtagaaacataatgatgttaggtg
taatggac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 352
Transcript exons: 10820993-10821116,10821194-10821285,10821387-10821522
CTCAAGATTTAACGGAGGCGACGAGAGCCAAGCTAGTTCTTCCACTTGTGCTAAATCAACATTT
CGCGGTAGAAACATAATGATGTTAGGTGTAATGGACTGAGCAATCTGAAACAATGAGTACCCGT
CTCTTGGTTGAAGCATATCCAAATTGTAACTCTCAAAATCTCTATACATTGGTCCTCCCCATGG
TGGTGAAAGAAACACTACATCTCCTTTGAGAGAAGGAGCTAATTGTATGAAATCACCAATGACA
AAATCAACACGATTAGCAACTCCATAAACCATGGCATTGTTCATCGCCAATTCAACTTTCACCG
GATCAATGTCAATAGCAACAACAGAAGAACAT

Genomic sequence CTCAAGATTTAACGGAGGCGACGAGAGCCAAGCTAGTTCTTCCACTTGTGCTAAATCAACATTT
CGCGGTAGAAACATAATGATGTTAGGTGTAATGGACTGAGCAATCTGAAACAATGAGTACCTAC
ACCAAAACAAAAACTCATTACAAGATCCACAACTATATTGAACACATCAATAGGTAAAGTAATC
TTTTGTTACCCGTCTCTTGGTTGAAGCATATCCAAATTGTAACTCTCAAAATCTCTATACATTG
GTCCTCCCCATGGTGGTGAAAGAAACACTACATCTCCCTAGTAGACAAGCGCAACAACAACAAC
AACAAAAGGGTCAAAATAAATCTTCACACTTGCAGAAATATAAAAACTGATAGAGAGAAGAAAA
AGAAGATTACTTTGAGAGAAGGAGCTAATTGTATGAAATCACCAATGACAAAATCAACACGATT
AGCAACTCCATAAACCATGGCATTGTTCATCGCCAATTCAACTTTCACCGGATCAATGTCAATA
GCAACAACAGAAGAACAT
Conservation Information
Conserved circRNAs NA
PMCS 0.228689312
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020