Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G08320_circ_g.4 |
ID in PlantcircBase | ath_circ_001331 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 2624256-2627507 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT1G08320 |
Parent gene annotation |
Transcription factor TGA9 |
Parent gene strand | - |
Alternative splicing | AT1G08320_circ_g.1 AT1G08320_circ_g.2 AT1G08320_circ_g.3 AT1G08320_circ_g.5 |
Support reads | 1 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G08320.1:7 AT1G08320.4:7 AT1G08320.3:7 AT1G08320.5:4 AT1G08320.2:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.110927952 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | ath-miR5658 |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |