Detail information of BGIOSGA033479_circ_ig.1


General Information
CircRNA Name BGIOSGA033479_circ_ig.1
ID in PlantcircBase osi_circ_008728
Alias Chr10:24532014_24533410(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21690010-21691407  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCAACATATAACATTCTGAATGAAGAGGGGAGGCCAGTCGCGGCTGCACTTCTTCCTTGCGGA
GTCACTTCTTGAAACACGAGTGTTACCTTTGTGGTGgatatgatgacaccggattcaatattaa
caaagtaaagtatgaaggaagcttgttgatagtagaaaacaagataatgacatgggcacccaaa
tcatttgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATATGATGACACCGGATTCAATATTAACAAAGTAAAGTATGAAGGAAGCTTGTTGATAGTAGA
AAACAAGATAATGACATGGGCACCCAAATCATTTGCAGAGATAACAGCTGAAAGGTAGGATTCA
TGCTTGAATCAGGTTTCTGGAAGTATTGAATTTGCATTGCTTCCAATTTATCCTTTTTTGATTA
ACAATGCATCTTCATTCAATAATGCAGTTTATCAATCTTCAAAGTAGTGCACCCTATCCCAGGT
AATTCTGCTATTGGTCAACATTTTTAGGCATTTTATCTTAGGCAACATATCCTATGCACACAGG
CCCTCACGTGTACACACGTGCACACCAACTAAAAAATGTCACCAAAAAATCTAGAAAAAATCAT
ACACATACTTTCAATTGTATTACACCTAGGGTTAAAATCTTAACGTCAAATTCATTATATTTTA
GCCGTAACAAAAAAACCAAAAAATCTGACAGTTTTAAGGTTGCAATTTTGTCAGAATTTTATCT
TTTTTGTTATTCTCTATGTAGAATGAATTTGAAGATGCGACTTTGCACGTAGATGTAATACTAT
TGAAAGTACATGTATGAATTTTCCTAGAATTTTTTGTGATAATTTTTAGTTGATGTACACGGTG
TGTACACGCGAGGGCCTGTGTGCATAGGATACGCTCCCTTTATCTTGATTGGACCTAGCCATTC
TGTCACCCATGTTTGAAATGTCCATATGGCTGTTTTTCTTTTAAAAATCAATCTCATGGTGCAG
CTTCATTAGGAAGCTAAAACAGGCATTGGCTGTTTATCAATCTACAAAGCTGTGCACTGAATTG
GTGCACAAATATTTTTAAGAATTTCAGGGTAGAACACAGTCAATGCAAACCTTCCTTGAATTAA
CTGAATAGTTTAATTGTCCAAGCATCTTTCTCCTACTGGGGCTCAAGATGTGTTCCAGGATATT
GCACCCTCATGGTTGAGTAGATTTTTGTATTTCTGATTCAAAAGCACCGTTTGTGGGTTGACAT
CATTTTGTGTGCCATGCTTCTCCAGAGATTCTGATTCTTGGTTGTGGTAGACACATCCAACCAA
TCAGTCCTGAGCTCCGCAAATTCATTCGGTCAACTGGGATGAAGCTGGAAGCAGTTGATTCGGT
AAAAGACCAAATGTTCCTTATTTACAACATCATCACTTGTGTTTGTAAACTTCAATGTAGCAGA
TATTTGTAGTTTGTTCTCTACCTACAATGTTTAGTCTTTTGCACATGTCTAATCCTTCTGTTGT
ATGGCAGAGGAATGCGGCTTCAACATATAACATTCTGAATGAAGAGGGGAGGCCAGTCGCGGCT
GCACTTCTTCCTTGCGGAGTCACTTCTTGAAACACGAGTGTTACCTTTGTGGTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021