Plant Circular RNA Database

Detail information of Os06g0167100_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os06g0167100_circ_g.2
					
						ID in PlantcircBase
						osa_circ_029800
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 3379573-3382841  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os06g0167100						
					
						Parent gene annotation
						
							Armadillo-like helical domain containing protein. (Os06t0167100-
01);Similar to AP-1 complex subunit gamma-1. (Os06t0167100-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os06g0167100_circ_g.3 Os06g0167100_circ_g.4 Os06g0167100_circ_g.5 Os06g0167100_circ_g.6 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0167100-01:7

General Information
CircRNA Name	Os06g0167100_circ_g.2
ID in PlantcircBase	osa_circ_029800
Alias	NA
Organism	Oryza sativa
Position	chr6: 3379573-3382841 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os06g0167100
Parent gene annotation	Armadillo-like helical domain containing protein. (Os06t0167100- 01);Similar to AP-1 complex subunit gamma-1. (Os06t0167100-02)
Parent gene strand	+
Alternative splicing	Os06g0167100_circ_g.3 Os06g0167100_circ_g.4 Os06g0167100_circ_g.5 Os06g0167100_circ_g.6
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0167100-01:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TAGAGGTCTCTCTTAAACGATACTCTGCAGACGTGACAACTCGGGCTATGTGTCTAGTATCTCT
CTTGAAGCTCTCTTCCCGATTCCCACCGACTTCAGAgttgcaacaaaaactgagtcaaataaga
acgcaggaaatgctattttatatgaatgtgttgagactataatgggcatcgaagctactagtgg
tttacgtg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTTGCAACAAAAACTGAGTCAAATAAGAACGCAGGAAATGCTATTTTATATGAATGTGTTGAGA
CTATAATGGGCATCGAAGCTACTAGTGGTTTACGTGTGCTGGCAATCAATATCTTGGGTAGATT
TCTGTCCAACCGTGATAATAACATCAGGTAATTCACTCTTTTCTCTTGGACAACTGATGTTCAA
GCCTCTTAACTTTTGTGAATAAAGGGTTTAAAGTAAAAGTTTGCTAGTTAATTTTCTTGTAATT
CAATGGGTTACTTACCCTGAGCATTGTTCCAAACTTCAAGGTACTACTGCTTGGTGCTTATGAT
TGACTATGAATTGGACTATTACTTTTGTACTCCCTCATATTATAGGAGTAAGTTGTACTATGAA
TTGGACCAAGTTTCTATACTCCTTTAAAAGACCCTAATTGTGGTGGTGAGTGGTGAATCTGCCA
CCACCTACCACCACTACCTTGTGGGTCCCCAAATAGTGAGATAGGTGGACTTTTATCCCTTCCC
CAACCAGAAGCCATCACACAAGGAAAATTTATTTTAAAGTGATATACAAAATGATGAAAAATAT
GATGTGAATGATTTACAATGGGACCATTTTATTTAATGTTTGAGGTTTTAAAGTCTTCTTTTAA
TTCCCGTTGCAACGCATGGGCATTCAGCTAGTATAGGAAAACGTAGCAACATTCCGTACCCAAA
AAAGTATACTACAAAAATATATTCAATGGTGGATTTAGTGGAACTAATTTGGTTTTGTAGATTT
TACTACATTTTCCTATAAACTTGGTCAGACTTCAAGAAGTTTGACTTAGGACAAACCTAAAATG
CCTTCTAATATGAAATGGAGGGAATAACACATTTGTATGATTTAGGTGTTTTGACTAGTAAAAT
ATTCTTCCATATGAGAGATAATTCTCAGTGTGCATACTGTGCTTTCAGATATGTTGCTCTGAAC
ATGCTTATGAAGGCCATGGAGGTAGACACGCAAGCAGTGCAGAGGCATAGAGCAACAATATTAG
AGTGTGTCAAGGTAAATTCTCCAGTTAATGTGCTCTGGATTTATTCTCATTCCTCTAGGGAAGT
AAAATAATGCTCATGTATGTAAAATTCTGAGACACACCTATGGTAGCTTCCTGAAAGTATACTG
TTTATTTCCGCACTTCTTGAGACTACAGCTAATCATAACTAGTGACAAGTGCAGACCATCCTCC
TTTCTTGCATTTCTAGTCAGGTTTAGCCGAGTGCATTAAGGAAAATTTCTTCTGCTTGATCCCG
TAGTAAATGATGATTGCATGATCATTTTAAAGAAAAAAACAGCATTGCCATAGTTTTTATGTCT
ACTGCAGTTTGCGTTGTTGATGTGCCTACTATTCACTTTCACTTTATTGTTACCAGATTTCTTG
TTCCTTTTCTTTTACACTTCAATAATTCGTAACTGCTGATGTTTTTCCAGGATGCTGATGTATC
TATTCGCAAAAGGGCCCTTGAACTTGTTTACCTTCTTGTCAACGATGCAAATGCAAAATCTTTG
ACCAAGGAGCTTGTTGATTACCTGGAAGTAAGTGATCAGGACTTCAAGGACGACCTCACAGCAA
AGATATGCTCAATTGTTGAAAAGTAAGACTTGACGTAGCATAACCCCCTCCTTATCTTTTTTTT
TACTGACCGACTTGATTCAGGGTCAATTTTTCGTGGATGTCATCTCTACTAGTTTTGTAAGAAC
TCTTAGTTGCATATTCTGTAAATGTTTCAAAGGTCCTTTGTATCCTGTTGTTACATGCATTTTG
AAACGTAACAGACAATCAAAAAGGATACTCATCCTATACAATTAATGGTGAAACTTCACATACG
GTACAGTATTATTTCCTACCCCAAGTGGAGCAAAGGGAAATATAAATAAGGGTAGACAATTTGT
TTAACGAGAATACATAGTTCCTTCCTTTTCATATCATTCCTAACCTTTCTTTACATAGCAAAGG
ATTTGCACATAGTTCTATCAGGAGGATAATAATCATGTCAGATCAACATAACATAATACACTAT
CTTCTGCATTGGTTTAGTTAACAGGCTATAAGCCTATAAAACAAGTATTTCATTTTACGACATT
TACCTGTGTTGTCCCTTTATTATATTTGTTCAATTTTGTTTTTTTCTCCTGTTGATTTATACCT
TTCTGTCTCCTGTTGATTTATGGACAATAATAATGTAGCATTTCAAATAGGTTTTCCCAAGATA
AACTTTGGTACTTAGACCAGATGTTCAAGGTTTTATCTCTGGTATGTACAGAAGCACAACTATG
GGGATATTTTCTCTTGCACCGTTCAATCAGTAAAAATCCATTTTGTTTGAATTATGTTACCTTG
TACATCCTCAGGCTGGAAATTATGTGAAGGACGATGTATGGCATGCTCTAATAGTCTTAATAAG
CAATGCATCTGAACTCCAAGGATACTCAGTGAGATCATTATACAAGGCATTGCTAGCTTGCGGT
GAACAGGTATGGAGAAATAGTCAGTCTTCTTTATGATCTATACCATTGAGTTGCTACTTATCTG
ACATACCTGAATCTCTTCTACATTGAATTATTTAGGAAAGTTTGGTTAGGGTAGCTGTATGGTG
CATTGGTGAGTATGGTGAAATGCTGGTGAACAATGTTGGTATGCTGGACATAGAGGAACCAATC
ACGGTGAGTTAACAATTCTTGCCACCATTCTCATTGGCTGCATGCTTCTGCCAAGAAGTCAGGA
TGCAATTAAACATTACTGCAGTTCTTGTTCAGGCATGTGATGCTTTCAATTTGGCTTAGTTTAT
TTTTAGGACTGATAAGTGATAACTCTTAGACACACTAAAAGTGTCTCATAATACCTCTTGTAAC
GATCAACTTGGAATTACCGAATTACAAGTGCTATATGTAATGATGGTCAAAAGGAAAAGCTACA
TGATAAATCATTTCCACCTATCCACATGTCTTTTGTAGATGGTTCACCACGAAATGCTTTATAG
AATTCGTCAGTTTGTTAGTTCAATGCTTTTCCAGTGTATGCTGGTGCTTCTCAGTATGTTTTTC
GTTTAGTACCATTGCTTTTCCAGTTTAAAAATTTTAAAACAGCTTGGTTTTTTTGTGTAACCTG
TTCAGGTAACAGAATCTGATGCCGTGGATGCTGTAGAGGTCTCTCTTAAACGATACTCTGCAGA
CGTGACAACTCGGGCTATGTGTCTAGTATCTCTCTTGAAGCTCTCTTCCCGATTCCCACCGACT
TCAGA
						
					

			
		

Sequences
Splice junction sequence	TAGAGGTCTCTCTTAAACGATACTCTGCAGACGTGACAACTCGGGCTATGTGTCTAGTATCTCT CTTGAAGCTCTCTTCCCGATTCCCACCGACTTCAGAgttgcaacaaaaactgagtcaaataaga acgcaggaaatgctattttatatgaatgtgttgagactataatgggcatcgaagctactagtgg tttacgtg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTTGCAACAAAAACTGAGTCAAATAAGAACGCAGGAAATGCTATTTTATATGAATGTGTTGAGA CTATAATGGGCATCGAAGCTACTAGTGGTTTACGTGTGCTGGCAATCAATATCTTGGGTAGATT TCTGTCCAACCGTGATAATAACATCAGGTAATTCACTCTTTTCTCTTGGACAACTGATGTTCAA GCCTCTTAACTTTTGTGAATAAAGGGTTTAAAGTAAAAGTTTGCTAGTTAATTTTCTTGTAATT CAATGGGTTACTTACCCTGAGCATTGTTCCAAACTTCAAGGTACTACTGCTTGGTGCTTATGAT TGACTATGAATTGGACTATTACTTTTGTACTCCCTCATATTATAGGAGTAAGTTGTACTATGAA TTGGACCAAGTTTCTATACTCCTTTAAAAGACCCTAATTGTGGTGGTGAGTGGTGAATCTGCCA CCACCTACCACCACTACCTTGTGGGTCCCCAAATAGTGAGATAGGTGGACTTTTATCCCTTCCC CAACCAGAAGCCATCACACAAGGAAAATTTATTTTAAAGTGATATACAAAATGATGAAAAATAT GATGTGAATGATTTACAATGGGACCATTTTATTTAATGTTTGAGGTTTTAAAGTCTTCTTTTAA TTCCCGTTGCAACGCATGGGCATTCAGCTAGTATAGGAAAACGTAGCAACATTCCGTACCCAAA AAAGTATACTACAAAAATATATTCAATGGTGGATTTAGTGGAACTAATTTGGTTTTGTAGATTT TACTACATTTTCCTATAAACTTGGTCAGACTTCAAGAAGTTTGACTTAGGACAAACCTAAAATG CCTTCTAATATGAAATGGAGGGAATAACACATTTGTATGATTTAGGTGTTTTGACTAGTAAAAT ATTCTTCCATATGAGAGATAATTCTCAGTGTGCATACTGTGCTTTCAGATATGTTGCTCTGAAC ATGCTTATGAAGGCCATGGAGGTAGACACGCAAGCAGTGCAGAGGCATAGAGCAACAATATTAG AGTGTGTCAAGGTAAATTCTCCAGTTAATGTGCTCTGGATTTATTCTCATTCCTCTAGGGAAGT AAAATAATGCTCATGTATGTAAAATTCTGAGACACACCTATGGTAGCTTCCTGAAAGTATACTG TTTATTTCCGCACTTCTTGAGACTACAGCTAATCATAACTAGTGACAAGTGCAGACCATCCTCC TTTCTTGCATTTCTAGTCAGGTTTAGCCGAGTGCATTAAGGAAAATTTCTTCTGCTTGATCCCG TAGTAAATGATGATTGCATGATCATTTTAAAGAAAAAAACAGCATTGCCATAGTTTTTATGTCT ACTGCAGTTTGCGTTGTTGATGTGCCTACTATTCACTTTCACTTTATTGTTACCAGATTTCTTG TTCCTTTTCTTTTACACTTCAATAATTCGTAACTGCTGATGTTTTTCCAGGATGCTGATGTATC TATTCGCAAAAGGGCCCTTGAACTTGTTTACCTTCTTGTCAACGATGCAAATGCAAAATCTTTG ACCAAGGAGCTTGTTGATTACCTGGAAGTAAGTGATCAGGACTTCAAGGACGACCTCACAGCAA AGATATGCTCAATTGTTGAAAAGTAAGACTTGACGTAGCATAACCCCCTCCTTATCTTTTTTTT TACTGACCGACTTGATTCAGGGTCAATTTTTCGTGGATGTCATCTCTACTAGTTTTGTAAGAAC TCTTAGTTGCATATTCTGTAAATGTTTCAAAGGTCCTTTGTATCCTGTTGTTACATGCATTTTG AAACGTAACAGACAATCAAAAAGGATACTCATCCTATACAATTAATGGTGAAACTTCACATACG GTACAGTATTATTTCCTACCCCAAGTGGAGCAAAGGGAAATATAAATAAGGGTAGACAATTTGT TTAACGAGAATACATAGTTCCTTCCTTTTCATATCATTCCTAACCTTTCTTTACATAGCAAAGG ATTTGCACATAGTTCTATCAGGAGGATAATAATCATGTCAGATCAACATAACATAATACACTAT CTTCTGCATTGGTTTAGTTAACAGGCTATAAGCCTATAAAACAAGTATTTCATTTTACGACATT TACCTGTGTTGTCCCTTTATTATATTTGTTCAATTTTGTTTTTTTCTCCTGTTGATTTATACCT TTCTGTCTCCTGTTGATTTATGGACAATAATAATGTAGCATTTCAAATAGGTTTTCCCAAGATA AACTTTGGTACTTAGACCAGATGTTCAAGGTTTTATCTCTGGTATGTACAGAAGCACAACTATG GGGATATTTTCTCTTGCACCGTTCAATCAGTAAAAATCCATTTTGTTTGAATTATGTTACCTTG TACATCCTCAGGCTGGAAATTATGTGAAGGACGATGTATGGCATGCTCTAATAGTCTTAATAAG CAATGCATCTGAACTCCAAGGATACTCAGTGAGATCATTATACAAGGCATTGCTAGCTTGCGGT GAACAGGTATGGAGAAATAGTCAGTCTTCTTTATGATCTATACCATTGAGTTGCTACTTATCTG ACATACCTGAATCTCTTCTACATTGAATTATTTAGGAAAGTTTGGTTAGGGTAGCTGTATGGTG CATTGGTGAGTATGGTGAAATGCTGGTGAACAATGTTGGTATGCTGGACATAGAGGAACCAATC ACGGTGAGTTAACAATTCTTGCCACCATTCTCATTGGCTGCATGCTTCTGCCAAGAAGTCAGGA TGCAATTAAACATTACTGCAGTTCTTGTTCAGGCATGTGATGCTTTCAATTTGGCTTAGTTTAT TTTTAGGACTGATAAGTGATAACTCTTAGACACACTAAAAGTGTCTCATAATACCTCTTGTAAC GATCAACTTGGAATTACCGAATTACAAGTGCTATATGTAATGATGGTCAAAAGGAAAAGCTACA TGATAAATCATTTCCACCTATCCACATGTCTTTTGTAGATGGTTCACCACGAAATGCTTTATAG AATTCGTCAGTTTGTTAGTTCAATGCTTTTCCAGTGTATGCTGGTGCTTCTCAGTATGTTTTTC GTTTAGTACCATTGCTTTTCCAGTTTAAAAATTTTAAAACAGCTTGGTTTTTTTGTGTAACCTG TTCAGGTAACAGAATCTGATGCCGTGGATGCTGTAGAGGTCTCTCTTAAACGATACTCTGCAGA CGTGACAACTCGGGCTATGTGTCTAGTATCTCTCTTGAAGCTCTCTTCCCGATTCCCACCGACT TCAGA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.10403898

Conservation Information
Conserved circRNAs	NA
PMCS	0.10403898

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							3379643-3379639(+)
3380551-3382789(-)
						
						Potential amino acid sequence
						
							MGIEATSGLRVLAINILGRFLSNRDNNIRYVALNMLMKAMEVDTQAVQRHRATILECVKDADVS
IRKRALELVYLLVNDANAKSLTKELVDYLEVSDQDFKDDLTAKICSIVEKFSQDKLWYLDQMFK
VLSLAGNYVKDDVWHALIVLISNASELQGYSVRSLYKALLACGEQESLVRVAVWCIGEYGEMLV
NNVGMLDIEEPITVTESDAVDAVEVSLKRYSADVTTRAMCLVSLLKLSSRFPPTSELQQKLSQI
RTQEMLFYMNVLRL*(+)
MAFISMFRATYLMLLSRLDRNLPKILIASTRKPLVASMPIIVSTHSYKIAFPAFLFDSVFVATL
KSVGIGKRASREILDT*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	3379643-3379639(+) 3380551-3382789(-)
Potential amino acid sequence	MGIEATSGLRVLAINILGRFLSNRDNNIRYVALNMLMKAMEVDTQAVQRHRATILECVKDADVS IRKRALELVYLLVNDANAKSLTKELVDYLEVSDQDFKDDLTAKICSIVEKFSQDKLWYLDQMFK VLSLAGNYVKDDVWHALIVLISNASELQGYSVRSLYKALLACGEQESLVRVAVWCIGEYGEMLV NNVGMLDIEEPITVTESDAVDAVEVSLKRYSADVTTRAMCLVSLLKLSSRFPPTSELQQKLSQI RTQEMLFYMNVLRL(+) MAFISMFRATYLMLLSRLDRNLPKILIASTRKPLVASMPIIVSTHSYKIAFPAFLFDSVFVATL KSVGIGKRASREILDT(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os06g0167100_circ_g.2

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