Detail information of AT1G54240_circ_g.1


General Information
CircRNA Name AT1G54240_circ_g.1
ID in PlantcircBase ath_circ_007299
Alias 1:20253066-20253968
Organism Arabidpsis thaliana
Position chr1: 20253066-20253968  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G54240
Parent gene annotation Putative uncharacterized protein
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G54240.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAATATAAATTGCAGGAAAGGAACGAGTTACAGGAAGATTTTAGGGAGCGGTTGGAAAACCAG
CTGAGATATCTAGTTTCTGAAGGCCAAGTATACAAGcgacgatccttcttcagtggccatggtt
tctggagatacaaaatcggatgcgaacaacgttacttatgggttcgtgaacttttgtatttccc
aaagccaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGACGATCCTTCTTCAGTGGCCATGGTTTCTGGAGATACAAAATCGGATGCGAACAACGTTACT
TATGGGTTCGTGAACTTTTGTATTTCCCAAAGCCAATTTTGTGGAAATGAGAGAGATCGATCGA
TGCTTAAAGCTCTGCTTCAACTAATAATGTCAATTTCTTTCTCTTTTTTTCAGAGACCTTCCTT
CTTCTCCAGCGGCTACGGATTCTTCAGAACCTTCTTCCTATGCGTTAGTGAATTTTATTGTATT
CTTTAGAACCAATCTTTTAGAATTGATCTTTGCTTTTCTGGTTATGTTTTGATTGATTTGTTAT
CTCATTTTCAGTGAACAGCTTGAAAGGCTCATGATGATAGATTCAGAAGAAGACCGGGGTCCCT
CTGGGTTTGTGACCTTCTCGATTCTTTAACCACCAATCTTTGTTTTCTCTGGTCTATCTATGTT
TTGATATTACTCTTTTTTTGTTGGTTTTGTTTCAGGTTTACGACTGATGAATTGATCTTTCAGG
CTTTAGAAACAGTCTACGAGAATCATAATGGTCTTGATGTCGATGCGATTTTCACTTTTATCAA
GGTTAGGAGGATCTCTCTGTCTCTATAAGTATCTGTGTTTCATGGTCATATCTCATGAGTAGTG
TATATTGGTTCTGAAATGTGAGTCAATAGCGGGATTACACAATGGAACATTAGGATCTGAAAAT
TTGACTTCATGTTCCATCCCCTAAAAGTCTTCCTTTTAAAGTCTTGGTTTTGTTGATTCCTCCG
TTGTTCTTGATCAACTAACCATCATGTTCTTGTGGTTAATATAAATTGCAGGAAAGGAACGAGT
TACAGGAAGATTTTAGGGAGCGGTTGGAAAACCAGCTGAGATATCTAGTTTCTGAAGGCCAAGT
ATACAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.107711591
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020